BAC Information

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BAC

Clone NameMSMg01-146C20
Chromosome5 (Build37)
Map Location 111,905,591 - 112,053,523
singlet/doubletdoublet
Overlap genenone
Upstream geneGalnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb, Mn1
Downstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146C20.T7 (MSMg01no146_c20.b1)MSMg01-146C20.TJ (MSMg01no146_c20.g1)
ACCAG349784AG349785
length1,2161,237
length of high quality
(start - end)		485 (133 - 617)593 (126 - 718)
definitionCHROMAT_FILE: MSMg01no146_c20.b1 PHD_FILE: MSMg01no146_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:38 2005CHROMAT_FILE: MSMg01no146_c20.g1 PHD_FILE: MSMg01no146_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,905,591 - 111,906,074)(112,052,931 - 112,053,523)
sequence
CGTCTCTTTTNNAACATTGGCGCTAAGACTCCTATAGGGAGAGGATCCGC
GGAATTCGGACTCCTGTGGACCCCTTAAAGGACGGAGGTCTTCATGCTTC
TTATGTAGAGCCTTTGAGTGGTCCTGACCCCAATGCGCAGTCTCCCAATA
TTTCAACCGGCTCTAGATGACTACCCACACCTAGCATCCAGGAAATGTGT
TGCAGGATCAGGGAGTAAAAGAAAACCAGTCTATACCTCAGCGCACAGGC
CTTTGGAGATCAACCCTTTCAGTCCCGGGTCAGGAACTGTGGAAGGGCTG
GCTGTTTTCCTTCTTCCTGTGCTGTGAATTTTGAGGTAAAGTAGGAAGAC
TCCTGGGTCAAGTGAGAATTGTACCAGGGGTGGTAATCGAGCCTTGACAT
TTCTCAAGCCACAGCCACCCAGGGACTGATAAATCTAGCTTCATAAATGC
AATTATGAAATGCTCACCAAGGTGGCCCTTGTTATTCTGGAACCCAGAGC
TCTAGTTGGAGGCCAGCCTGGGCTACACAGTGAGATCCTATCTCAAAACC
TGAACAGACAAACACAGAACCAAACAAAGTATTACTGGTCACAACTCTGC
CCAGCGTGCCCACCCTGGCAGACCTTAGAACCCTGAGTCACAGAGAGCAC
AGGGCCCCTAACCCAGTGCCTGGGCGCCTTGCCTCCAACCGAGTTCTGTT
GTTCCCTGCTTCATCTGGTTTCATGTGTTTTCCTAGCCTCACCTCCCTTG
GTTTCCATGGCGACCCTCTGCAGTTTGTTAGTGACAGTCAAGCCTCCTTC
CAAAGGAGGATGTACAGGTCGACAGGAGAATTCTCAACAGATATCAGGCC
CCAAAAGCTGCTGGCTCTGTCTTTTAAATCCTTACACAATTCCCAGTCCC
AGGGTGTTGGCCTGTCATCCCCAGGGGTATTCTTCTACAGGGCTCTTTTG
AAGTTAAGTAAAAATATTTTGGTCTCCCTTAAAAAAAATCCGGGACCTGG
GTTTTTTTGTGATTTCTATTCCTCTTCTTACCTTCTCTATACTTTTCTTC
TATCTTTATTATTTTCTTTCTTCTTTTCTTCTCTTCTCTCTACATTATTT
TCTTTTTTTTTCTTCATTTTCTTTATTTATTATTCTTTTCTCTATATTTC
TTTTCTTCTTTCTCTTTTTATTCCTTCTACTTTTTTTTCTTTATTTTTTT
TTCTTTTTTTTTCTTC

NCGGATTTTTTTTTTAAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGCCCTTAAAACCTGAGGTAGGAGTTGG
CTTGCTCCATGACACCTTTGAGAGATGGCCCCCATCAGGTTCCCAGGCAA
GAGTCTCCTCCTCTCTACTCTCCAGCCTCGTCCTGAGCCACAAGAAGGAA
GGAGGAAGTGGAATGTCTAGGCAGGAAACAGGAAGCTCCTGGAGGCAGGG
AACAAGCTTCTCTCAGGAACCAATACGCAATCATTTCAGAGTATGGAGTA
TGGGGGGTGCCAGAAACCTAGGCCTGCCTGCTTGCCTCTTTGCCCAAAGC
TGGAAAAGGACAGAGCACCTCTTGGGGAACAAAGGTGTTCTCTACCCTCA
GGTCTTGTAGGGAGGAAAAGGCTGGGCAGGGCCTCATTTCCCCTGTCCAC
AGGGCAGGGATTACGGTCAGAGGGTACCAGAGAGCTTTGTGACTCAATGG
GTCAGCATGGGTCACTGTTGAAAGGCTGTCACTGAGCAGCCTTCAGTGAC
AGAGTGTGCTTCTGTGACTTGGTTTCCCCAGTTACACAACCAGAGGCCTG
AGCACTATGGATGGCCCTATAGTTTGCCACCAGGCCAGGACTCTGTACCC
ATAAACCCCCACGTGCAGTGAGAGCTCCCTACATGCATTGCACATTAAGG
CACACAGAAAGTGTCTACTAAGAAGAGAAGTAATCGGGAAGTGACTATCC
TGACACACAGTATGGCAGGATCCGAATCCAGTTTTCCCCTCACAGCTGTC
CTTTCATGATGTTCGCATTCTGAACATGGTGGTTCCTGTCCCCAAGGATA
CCCTTTTCCTTTAACAATCAGTGGTTTTGGTATTATAGACATGTTATGAT
CCCCATTTTGCTTTATTTGATGTGGTTGTTAGGTATTGAACTTTCCTTTT
ATTGCATATCTTATGATTTGTGTGTTGTCCTTATATATATTGCTTCTATG
GTTTAAATTTATTTTTTGTTTTTTCTAAATTTCTGATTTTTTTTTTCTTT
TATTTTCTGGTGTTGTTTTATTCCATCTGTATCTTGTTTTTGTTTATCTT
CTTTTCTTTTCTTTTTTATATATATTATTTTATTGCTTTTTATCTTAGTT
AAGTCATTTCCTATCTCTTTTTCTATCTTCTTCTGTATATTGTATTTGGG
TCTGTTTTTTCTCTTTCTANCGTCTTTCTTCTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_c20.b1 MSMg01no146_c20.b1 CHROMAT_FILE:
MSMg01no146_c20.b1 PHD_FILE: MSMg01no146_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:38 2005
         (485 letters)



>mm_chr5_111905391_111906275
          Length = 885

 Score =  907 bits (469), Expect = 0.0
 Identities = 481/485 (99%), Gaps = 1/485 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcgcagtctcccaatatttcaaccggctctagatgactacccacacctagcatccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcgcagtctcccaatatttcaaccggctctagatgactacccacacctagcatccagg 260

                                                                       
Query: 61  aaatgtgttgcaggatcagggagtaaaagaaaaccagtctatacctcagcgcacaggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgtgttgcaggatcagggagtaaaagaaaaccagtctatacctcagcgcacaggcct 320

                                                                       
Query: 121 ttggagatcaaccctttcagtcccgggtcaggaactgtggaagggctggctgttttcctt 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ttggagatcaaccctttcagtcccgggtcaggaactgtggaggggctggctgttttcctt 380

                                                                       
Query: 181 cttcctgtgctgtgaattttgaggtaaagtaggaagactcctgggtcaagtgagaattgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcctgtgctgtgaattttgaggtaaagtaggaagactcctgggtcaagtgagaattgt 440

                                                                       
Query: 241 accaggggtggtaatcgagccttgacatttctcaagccacagccacccagggactgataa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 accaggggtggtaatcgagccttgacatttctcaagccacagccacccaggggctgataa 500

                                                                       
Query: 301 atctagcttcataaatgcaattatgaaatgctcaccaaggtggcccttgttattctggaa 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 atctagcttcataaatgcaattatgaaatgctcactaaggtggcccttgttattctggaa 560

                                                                       
Query: 361 cccagagctctagttggaggccagcctgggctacacagtgagatcctatctcaaaacctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccagagctctagttggaggccagcctgggctacacagtgagatcctatctcaaaacctg 620

                                                                       
Query: 421 aacagacaaacacagaaccaaacaaagtattactggtcacaactctgcccagcgtgccca 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 aacagacaaacacagaaccaaacaaagtattactg-tcacaactctgcccagcgtgccca 679

                
Query: 481 ccctg 485
           |||||
Sbjct: 680 ccctg 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no146_c20.g1 MSMg01no146_c20.g1 CHROMAT_FILE:
MSMg01no146_c20.g1 PHD_FILE: MSMg01no146_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:38 2005
         (593 letters)



>mm_chr5_112052731_112053723
          Length = 993

 Score = 1116 bits (577), Expect = 0.0
 Identities = 589/593 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcccccatcaggttcccaggcaagagtctcctcctctctactctccagcctcgtcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tggcccccatcaggttcccaggcaagagtctcctcctctctactctccagcctcgtcctg 734

                                                                       
Query: 61  agccacaagaaggaaggaggaagtggaatgtctaggcaggaaacaggaagctcctggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agccacaagaaggaaggaggaagtggaatgtctaggcaggaaacaggaagctcctggagg 674

                                                                       
Query: 121 cagggaacaagcttctctcaggaaccaatacgcaatcatttcagagtatggagtatgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cagggaacaagcttctctcaggaaccaatacgcaatcatttcagagtatggagtatgggg 614

                                                                       
Query: 181 ggtgccagaaacctaggcctgcctgcttgcctctttgcccaaagctggaaaaggacagag 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 613 ggtgccagaaacctaggcctgcctgctcgcctctttgcccaaagctggaaaaggacagag 554

                                                                       
Query: 241 cacctcttggggaacaaaggtgttctctaccctcaggtcttgtagggaggaaaaggctgg 300
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 553 cacctcttggggaacaaaggtgttctctaccctcaggtcatggagggaggaaaaggctgg 494

                                                                       
Query: 301 gcagggcctcatttcccctgtccacagggcagggattacggtcagagggtaccagagagc 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 493 gcagggcctcatttcccctgtccacagggcagggattacggtcagaaggtaccagagagc 434

                                                                       
Query: 361 tttgtgactcaatgggtcagcatgggtcactgttgaaaggctgtcactgagcagccttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttgtgactcaatgggtcagcatgggtcactgttgaaaggctgtcactgagcagccttca 374

                                                                       
Query: 421 gtgacagagtgtgcttctgtgacttggtttccccagttacacaaccagaggcctgagcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtgacagagtgtgcttctgtgacttggtttccccagttacacaaccagaggcctgagcac 314

                                                                       
Query: 481 tatggatggccctatagtttgccaccaggccaggactctgtacccataaacccccacgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tatggatggccctatagtttgccaccaggccaggactctgtacccataaacccccacgtg 254

                                                                
Query: 541 cagtgagagctccctacatgcattgcacattaaggcacacagaaagtgtctac 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cagtgagagctccctacatgcattgcacattaaggcacacagaaagtgtctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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