Query= MSMg01no146_e19.b1 MSMg01no146_e19.b1 CHROMAT_FILE:
MSMg01no146_e19.b1 PHD_FILE: MSMg01no146_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:54 2005
(581 letters)
>mm_chr5_45779780_45780760
Length = 981
Score = 1079 bits (558), Expect = 0.0
Identities = 576/582 (98%), Gaps = 2/582 (0%)
Strand = Plus / Minus
Query: 1 gctgccaaagcccaccagtcactccattaattataaagcaaaggaaaaaatgagtattga 60
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gctgccaaagcatagcagtcactccattaattataaagcaaaggaaaaaatgagtattga 722
Query: 61 tctcaaggagttccattccacttgctcggtattaattgaaagttattcgtctgatgttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tctcaaggagttccattccacttgctcggtattaattgaaagttattcgtctgatgttac 662
Query: 121 ttaaaagaaattcaaggcaatatagaaaataatgcttaaaatacccattcagggttaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttaaaagaaattcaaggcaatatagaaaataatgcttaaaatacccattcagggttaagt 602
Query: 181 gaactcaggctggcacttctataaatatgatatttggaaattggaactggactgtgggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaactcaggctggcacttctataaatatgatatttggaaattggaactggactgtgggtg 542
Query: 241 aatgacaaagtggccctcaagttcccgttccatctcaca-gtgtacaaactcacttctga 299
||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||
Sbjct: 541 aatgacaaagtggccctcaagttcccgttccatctca-aggtggacaaactcacttctga 483
Query: 300 ttggcttgggaggagtcagagtgctgatccagcagcatagacatagacagagagtgcagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttggcttgggaggagtcagagtgctgatccagcagcatagacatagacagagagtgcagc 423
Query: 360 ccttaacccaggaaggttccctgtgcaagcaacatctgatttctcactttttgacttaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccttaacccaggaaggttccctgtgcaagcaacatctgatttctcactttttgacttaat 363
Query: 420 caatcatgcctttcaaacacatgaatgtggctctactcctggtaggacgccaactctgtc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caatcatgcctttcaaacacatgaatgtggctctactcctggtaggacgccaactctgtc 303
Query: 480 ctaagaccgactggctaatgcttgtgtagcactgtcagccaacttgttcatgctcacaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctaagaccgactggctaatgcttgtgtagcactgtcagccaacttgttcatgctcacaat 243
Query: 540 gatgcacagggagggcatacacaccactgttgccacttatag 581
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gatgcacagggagggcatacacaccactgttgccacttatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_e19.g1 MSMg01no146_e19.g1 CHROMAT_FILE:
MSMg01no146_e19.g1 PHD_FILE: MSMg01no146_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:55 2005
(594 letters)
>mm_chr5_45618857_45619850
Length = 994
Score = 994 bits (514), Expect = 0.0
Identities = 574/594 (96%)
Strand = Plus / Plus
Query: 1 taagggagaaagcgtttattctacctgacagttcaagtcagcatccattatgatgaagaa 60
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 taagggagaaagtgtttattctacctgacagttcaagtcaccatccattatgatgaagaa 260
Query: 61 gccaaggtagcagaagcttgaagcaataggtcatagcacatccacagtcaaaacaagaga 120
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 261 gccaaggtagcagaagcttgaagcaataggtcatagtacatccacagttaaaacaagaga 320
Query: 121 gcgatgaatccatggggctgctctgccctctttctctccttctaaactccaggatccctg 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gcgatgaatccatggggctgctctgccttctttctctccttctaaactccaggatccctg 380
Query: 181 ctagggaatgtgtcacccacagtgggagagtctttaaacctcagtgagtgtatcaagata 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagggaatgtatcacccacagtgggagagtctttaaacctcagtgagtgtatcaagata 440
Query: 241 atcccaccaggggcccatctcctgtttaattctagtcccatcaaactgatgagtaacact 300
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 441 atcccaccaggggcccatctcctgggtaattctagtcccatcaaactgatgaataacact 500
Query: 301 aatcatcacactgttcaaataccactccttctcagcatctttgctgcctctttggatgca 360
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccatcacactgttcaaatgccactccttctcagcatctttgctgcctctttggatgca 560
Query: 361 gggaaactgcttttaacatgagctattgttcatggtccttgtttctctcaaggatgaagc 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggaaactgctcttaacatgagctattgttcatggtccttgtttctctcaaggatgaagc 620
Query: 421 cacaggacaatcttggttttgttgacctggccagatgtgtatgtgtccatttcctcttac 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacaggacaatcctggttttgttgacctggccagatgtgtatgtgtccatttcctcttac 680
Query: 481 agtcgtcaacagacacataggttttaagtgcctcacttctcattaaagaactaagaaatt 540
|||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||||||||
Sbjct: 681 agtcgtcaacagacacataggtttcaagtgcctcgcttctcattcaagaattaagaaatt 740
Query: 541 tcagagatttggcagcaaatgttaaataacttccattgaaaacggacgcaaatg 594
|||||||||||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 741 tcagagatttggcagcaaatgttaaaaaacctccattgaatacggacgcaaatg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
