NCCGGTTTTTNNNNNACATTGGGCGCTAAGACTCCTAAGGGAGAGATCCG
CGGAATTATTAATTCATAAGTAGCGATAAAATATGCAGTGTTGATTTCTT
GTGAACTATTTGACATTTAGAATCACAACATCCCCACGGATTTTAGTTAT
ATTGTTATGTTTTCTGAATGGGAAGCCCTCAGGGCTTAGCTGCCATCTGG
TTGACCTTGACATCCTCATGGAGCTGCTTCTCCTCCATGGTGAGCTTTTC
AGAATAAATATCAAAACAACAACAATGAAACAACAAGCAGAGGAATACCA
ACAAAAACCACATAGAAACCTACCTCCCAAAAATGCTAGTCAACTTTTCC
CTGTGATATGAGCCACAGTTGATTATTAACATGTTTATCTACATTTTTAA
ATTTTTATACATTTACCTTCCATATAACCTATATGTTACAATACATTTTG
GGTTTATCTCAGGAAAATGTACTTTGTAATTTTTGGTAAAAATTTCTTTT
GCAGCCGGGAGTGGTGGCACACACCTTTAATCCCAGCACTCAGGAGGCAG
AGGCAGGTAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTT
CCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACTAANAA
AAAAAAAAAAAGAAAGAAAAAAAAATTCTTTTGCGTGATTTAATCACTAT
ATGTCTTTCTATCATACTGATACCTATACCTTAGAGGGGAAATAAAAGAA
TTTGAGAGCCCATGAAAATATTATTTAAAATGTATTTATCTATTTTATGT
TCATGTGTCCATGCCTAAATATATGTGTATATATCAAAAGTGTGCAGGTG
AGTGAGGAGGCTAGACATAGAAGTGGATCTCTGGAGATGTAATGAGAGTC
AACTGTGAACATTCCCATGTTTGTGGAAAATGGACTGGAGTCTTCCTAAT
ACCTTCAAGAATTCTAATTTTTTTCCCTTCTTTTATAAAAAATTTTTCTT
ATTACATTCACAGGTATTTCCCTTTCTGGTTTTTCCTTTGAAAACCCTAT
TTTTTTTCCTCACCCTTTCTAGGGTTTTTAACTTTTTTTCTTCTTTTTCC
TTTTCCTGTTCTTTTTATGAAATTTGTTTCTTTCTTTGTTTGTGTCTCAA
TCCCTCCCTTTCCTTTTCATCCTTCTTATAACC

NCCATTCTTTTTTNAAATGATGTGAGNCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAATATTCAAGTAAAAAT
TAGAAATTAAAGTTAATATCCTTTGTGCCAACCTTTGCCCAAGAATGAAC
TATTATGCCTAGAATGTGTATTTGAATTTTATATAAATAATTTAGATATG
GATGCTGGAGTTGGAAGGTTTGCTTGTTTGCTTGTTGTTTAAGCATAAAA
TATTCTACATCTTCTAGAAACACTAGAATTCATTCTCTCCTTCAGAGAAA
CTGAGTTTGAGAAATGGATTCCCTATTTAATTTTATTTCTAAGGATGTAT
GCTCATTATTAGTTTAGTATTGACTTTTGTATATTACAGACATAAGAGCT
AATATTTTTTATCAACTTGATTGATAGTAAATGCTTAAAATATCTTTGTA
AAATAAATCAGTTTTTAAAACATTGAATGGAAACATTAAAATGGAAATTA
GCCTCATACACACTGTGGATCTTTTGTTTAATGAAGAAAGAAATAATAAA
AAATACAGCAAAACAGTATCAAAAAGAAAAAAGGAAATAAATTTTATATG
CAACTAAAGAGAATATTTATTACCGTAGGATTCCTTAGTTGCTTTGCCAA
GTCCAGAGATATGATTAAAGAGTATTCGCATGAAACCTCTCTGAGTGTAG
TACTCTGTTATCCTACTTTTAGATTAATTGTTCCTGTGTCTTTAAATTAC
AAGAAAAAAGTATTTTATCGTCCACAATATTTTCTATAATTTCATATTGA
AAATTAATTTTGAAGAATATGTTTCCTTTTCTTTACTTATAGCACCACAA
GAAGGCAATTCTCAGTAGATGCTCAATTACTATTTTAACATTATCTTGAG
CCTTCACGATGTTATTAGGAATTACTGCAAATATAATAATGTATCCCTCT
CCCTCATAATCACATTTTCATTCCAATAATATTATTAACCTTATAAATCC
CCCCATTTTATTTTAATGAAATCTTTTGACCTTCCACTTAATTTATTTCA
AAATTTATTTTTTGAAATTTATATTTTCCCATAATAATATTTTCTCTTTC
ATCTTTGTTTTTTAATGATTGCTGTCATTTTTTTTTACATGTTTATTATT
TTGTTCCCTAATTTGTATTTATATTTTTTACTTTACTCTTTCTCATTTTT
TCTTAAA

Query= MSMg01no146_f19.b1 MSMg01no146_f19.b1 CHROMAT_FILE:
MSMg01no146_f19.b1 PHD_FILE: MSMg01no146_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:03 2005
         (722 letters)



>mm_chr5_12145252_12146373
          Length = 1122

 Score =  882 bits (456), Expect = 0.0
 Identities = 489/500 (97%)
 Strand = Plus / Minus

                                                                       
Query: 13  ggattttagttatattgttatgttttctgaatgggaagccctcagggcttagctgccatc 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ggattttagttatattgttatgttttctgaatgggaagccctcagggcttagctgccatc 517

                                                                       
Query: 73  tggttgaccttgacatcctcatggagctgcttctcctccatggtgagcttttcagaataa 132
           |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 516 tggttgaccttgtcatcctcatagagctgcttctcctccatggtgagcttttcagaatga 457

                                                                       
Query: 133 atatcaaaacaacaacaatgaaacaacaagcagaggaataccaacaaaaaccacatagaa 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atatcaaaacaacaacaatgaaacaacaagcagaggaataccaacaaaaaccacatagaa 397

                                                                       
Query: 193 acctacctcccaaaaatgctagtcaacttttccctgtgatatgagccacagttgattatt 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 acctacctcccaaaaatgctagtcaacttttccctgtgatatgagccacagttgattatt 337

                                                                       
Query: 253 aacatgtttatctacatttttaaatttttatacatttaccttccatataacctatatgtt 312
           |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 336 aacatgtttatctacattttaaaatttatatacatttaccttccatataacctatatgtt 277

                                                                       
Query: 313 acaatacattttgggtttatctcaggaaaatgtactttgtaatttttggtaaaaatttct 372
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 276 acaatacattttgggtttatctcaagaaaatgtactttgtaatttttggtaaaaatttct 217

                                                                       
Query: 373 tttgcagccgggagtggtggcacacacctttaatcccagcactcaggaggcagaggcagg 432
           |||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 216 tttgtagccgggagtggtggcacacgcctttaatcccagcactcaggaagcagaggcagg 157

                                                                       
Query: 433 tagatttctgagtttgaggccagcctggtctacagagtgagttccaggacagccagggct 492
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tggatttctgagtttgaggccagcctggtctacagagtgagttccaggacagccagggct 97

                               
Query: 493 acacagagaaaccctgtctt 512
           |||| |||||||||||||||
Sbjct: 96  acacggagaaaccctgtctt 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space:   791744
Effective search space used:   791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no146_f19.g1 MSMg01no146_f19.g1 CHROMAT_FILE:
MSMg01no146_f19.g1 PHD_FILE: MSMg01no146_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:03 2005
         (729 letters)



>mm_chr5_12046108_12047236
          Length = 1129

 Score = 1278 bits (661), Expect = 0.0
 Identities = 709/725 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtaaaaattagaaattaaagttaatatcctttgtgccaacctttgcccaagaatgaac 60
           |||||||||||||||||||||||||||||  ||||||||||||||||   ||||||||||
Sbjct: 201 aagtaaaaattagaaattaaagttaatatattttgtgccaacctttgtggaagaatgaac 260

                                                                       
Query: 61  tattatgcctagaatgtgtatttgaattttatataaataatttagatatggatgctggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattatgcctagaatgtgtatttgaattttatataaataatttagatatggatgctggag 320

                                                                       
Query: 121 ttggaaggtttgcttgtttgcttgttgtttaagcataaaatattctacatcttctagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggaaggtttgcttgtttgcttgttgtttaagcataaaatattctacatcttctagaaa 380

                                                                       
Query: 181 cactagaattcattctctccttcagagaaactgagtttgagaaatggattccctatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactagaattcattctctccttcagagaaactgagtttgagaaatggattccctatttaa 440

                                                                       
Query: 241 ttttatttctaaggatgtatgctcattattagtttagtattgacttttgtatattacaga 300
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttatttctaagaatatatgctcattattagtttagtattgacttttgtatattacaga 500

                                                                       
Query: 301 cataagagctaatattttttatcaacttgattgatagtaaatgcttaaaatatctttgta 360
           |||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cataagagttaatatttaaaatcaacttgattgatagtaaatgcttaaaatatctttgta 560

                                                                       
Query: 361 aaataaatcagtttttaaaacattgaatggaaacattaaaatggaaattagcctcataca 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 aaataaatcagtttttaaaacattgaatggagacattaaaatggaaattagcctcataca 620

                                                                       
Query: 421 cactgtggatcttttgtttaatgaagaaagaaataataaaaaatacagcaaaacagtatc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 cactgtggatcttttgtttaatgaagaaagaaataataaaaaatacagcaaaactgtatc 680

                                                                       
Query: 481 aaaaagaaaaaaggaaataaattttatatgcaactaaagagaatatttattaccgtagga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaagaaaaaaggaaataaattttatatgcaactaaagagaatatttattaccgtagga 740

                                                                       
Query: 541 ttccttagttgctttgccaagtccagagatatgattaaagagtattcgcatgaaacctct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttccttagttgctttgccaagtccagagatatgattaaagagtattcgcatgaaacctct 800

                                                                       
Query: 601 ctgagtgtagtactctgttatcctacttttagattaattgttcctgtgtctttaaattac 660
           ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 801 ctgagtgtagtactctgttatcctacttttagattgattgttcccgtgtcgttaaattac 860

                                                                       
Query: 661 aagaaaaaagtattttatcgtccacaatattttctataatttcatattgaaaattaattt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aagaaaaaagtattttatcgtccacaatattttctataatttcatattgaaaattaattt 920

                
Query: 721 tgaag 725
           |||||
Sbjct: 921 tgaag 925


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space:   804561
Effective search space used:   804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)