Query= MSMg01no146_f20.b1 MSMg01no146_f20.b1 CHROMAT_FILE:
MSMg01no146_f20.b1 PHD_FILE: MSMg01no146_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:03 2005
(590 letters)
>mm_chr5_106246509_106247497
Length = 989
Score = 1017 bits (526), Expect = 0.0
Identities = 574/594 (96%), Gaps = 9/594 (1%)
Strand = Plus / Plus
Query: 1 gccacctcccatggcactgtttgcaaaccgtaacattctgagggaaccacttaagtgcaa 60
|||||||||||||||||||||||||||| | ||||||||||||||| |||||| |||||
Sbjct: 201 gccacctcccatggcactgtttgcaaacagcaacattctgagggaa-gacttaactgcaa 259
Query: 61 aatgctgattcatctaaagacttcggtcacactgggctgtggagtctcagtcaaacagaa 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 260 aatgctgattcatctaaagacttcggtcacactgggctgtggcgtctcagtcaaacagaa 319
Query: 121 ggaaactggccctcggtgtcttgtgagtctgtgaatccttgtgacagtgtgttagtgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggaaactggccctcggtgtcttgtgagtctgtgaatccttgtgacagtgtgttagtgttg 379
Query: 181 tacacaccagacatggggaaagcaagtcagacatgttttggcttaacagtgttttgtctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tacacaccagacatggggaaagcaagtcagacatgttttggcttaacagtgttttgtctt 439
Query: 241 tctccaacatctcttgagctcccatctgaagaactggttttatctggcccttgtacatcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctccaacatctcttgagctcccatctgaagaactggttttatctggcccttgtacatcc 499
Query: 301 ttagcaagcagtgagttttt----ccttagccactgacaaaaacgactttgaagttttat 356
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttggcaagcagtgagt----ggacccttagccactgacaaaaacgactttgaagttttat 555
Query: 357 tttgcttcgagacaggctcttctgtggctcaagctaccttctaactcaaaatgtagccaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tttgcttcgagacaggctcttctgtggctcaagctaccttctaactcaaaatgtagccaa 615
Query: 417 gaacgacctcagacttggactcgtactgtctccccctcccgagtgctagagctacagatg 476
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaatggcctcagacttggactcgtactgtctccccctcccgagtgctagagctacagatg 675
Query: 477 agcacctcacagcccacagactcagtggtgtggtggagtgcatgctagataaggactctg 536
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agcacctcgcatctcacagactcagtggtgtggtggagtgcatgctagataaggactctg 735
Query: 537 cgtacatctcaagcccctaaggtgtgtttaaatattccatgtttaagttacaga 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cgtacatctcaagcccctaaggtgtgtttaaatattccatgtttaagttacaga 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 989
Length adjustment: 10
Effective length of query: 580
Effective length of database: 979
Effective search space: 567820
Effective search space used: 567820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_f20.g1 MSMg01no146_f20.g1 CHROMAT_FILE:
MSMg01no146_f20.g1 PHD_FILE: MSMg01no146_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:03 2005
(513 letters)
>mm_chr5_106399005_106399924
Length = 920
Score = 922 bits (477), Expect = 0.0
Identities = 497/507 (98%), Gaps = 7/507 (1%)
Strand = Plus / Minus
Query: 14 ggggaaagtcgaattgtggtgagggcctgggacaaacacctgagccatgggctgtgggaa 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ggggaaagtcgaattgtggtgagggcctgggacaaacacctgagccatgggctgtgggaa 587
Query: 74 aggtccctggattctgtagctgaccaccccc------ccccagacacacataccacactt 127
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 586 aggtccctggattctgtagctgaccacccccccccctccccagacacacataccacactt 527
Query: 128 cccatcatgctggctgaaataaatatgctttgttgaggaaccatcagtgagctggctgag 187
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 526 cccatcatgctggctgaaataaatatgctttgttaaggaaccatcagtgagctggctgag 467
Query: 188 tgtttcagatcaggtattttcctcctccgtgtctctgacatctcaggaggggaagcccac 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgtttcagatcaggtattttcctcctccgtgtctctgacatctcaggaggggaagcccac 407
Query: 248 atgtctgccaagccaagtaactcttggtctctgatataacactttctgttggtgcaaaga 307
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 406 atgtctgccaagccaagtaactcttggtctctgagaaaacactttctgttggtgcaaaga 347
Query: 308 cgctcacatctggtgacatctactagatctgctctccacactcttgcaacatagtcttgt 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cgctcacatctggtgacatctactagatctgctctccacactcttgcaacatagtcttgt 287
Query: 368 ctgagttccctcaaagctatccataaaataagaacatgatactag-tttttttttaaaga 426
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 286 ctgagttccctcaaagctatccataaaataagaacatgatactagttttttttttaaaga 227
Query: 427 tttatttatttatgcatccgatctcattacagatggttataagccacatggttgctggga 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tttatttatttatgcatccgatctcattacagatggttataagccacatggttgctggga 167
Query: 487 tttgaactcaaggacttctggaagagc 513
|||||||||||||||||||||||||||
Sbjct: 166 tttgaactcaaggacttctggaagagc 140
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 920
Length adjustment: 10
Effective length of query: 503
Effective length of database: 910
Effective search space: 457730
Effective search space used: 457730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
