Query= MSMg01no146_i09.b1 MSMg01no146_i09.b1 CHROMAT_FILE:
MSMg01no146_i09.b1 PHD_FILE: MSMg01no146_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:24 2005
(528 letters)
>mm_chr5_19474108_19475035
Length = 928
Score = 938 bits (485), Expect = 0.0
Identities = 517/533 (96%), Gaps = 10/533 (1%)
Strand = Plus / Minus
Query: 1 cagtttcacacacccacattttaaattgcagctgattttgctctgatgtgccttttgcca 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagtttcacacatgtacattttaaattgcagctgattttgctctgatgtgccttttgcca 565
Query: 61 tctcctccctctccagctgaagccattctcgcaccaagcccctttcctgctttcctgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctcctccctctccagctgaagccattctcgcaccaagcccctttcctgctttcctgtta 505
Query: 121 gccttggcaaaggaatcaattttatcaaggataaaggaatacatttgctcaaatgagctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gccttggcaaaggaatcaattttatcaaggataaaggaatacatttgctcaaatgagctg 445
Query: 181 tgtcagctaccaccctctgaggactagaattttcaagtaaaacctacaaataaaaatgtg 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 tgtcagctaccaccctctgaggactagaattttcaagtccaacctacaaataaaaatgtg 385
Query: 241 aagagatcaaaacagcaattttgattattgttctacagaacag-----tttttttgggag 295
|||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 384 aagagatcaaaacagcaattttgattattgttctacagaatagaaaaa-----ttgggag 330
Query: 296 gcaaatgaattaatagtaaatcagactcagaaaatttgcatcagataaatagctgttata 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gcaaatgaattaatagtaaatcagactcagaaaatttgcatcagataaatagctgttata 270
Query: 356 agagtctctgtgacagcgtatatttgattaatatataagcaatatatcatttgatgataa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agagtctctgtgacagcgtatatttgattaatatataagcaatatatcatttgatgataa 210
Query: 416 aactagaagaaaatttatttatatttttaaaagcatacttaaatgttttattacattgat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aactagaagaaaatttatttatatttttaaaagcatacttaaatgttttattacattgat 150
Query: 476 ttacacactttgtgtgtgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ttacacactttgtgtgtgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_i09.g1 MSMg01no146_i09.g1 CHROMAT_FILE:
MSMg01no146_i09.g1 PHD_FILE: MSMg01no146_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:24 2005
(485 letters)
>mm_chr5_19359788_19360672
Length = 885
Score = 886 bits (458), Expect = 0.0
Identities = 473/478 (98%)
Strand = Plus / Plus
Query: 1 taacttttgaccccgtttttaggaacaagttacatttttcatatttctatttcaggcata 60
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacttttgagactgtttttaggaacaagttacatttttcatatttctatttcaggcata 260
Query: 61 cacatgcacacgcatatatacacatatacacaagtacaaacacatacacacacatatatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatgcacacgcatatatacacatatacacaagtacaaacacatacacacacatatatc 320
Query: 121 aggaagacagcttcactatgaaaatgtttttaaaggtcacttccctctccttcattttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaagacagcttcactatgaaaatgtttttaaaggtcacttccctctccttcattttga 380
Query: 181 gaagctagttcattctttgtgcagataatgactgactacaaatgtcaccaattcaaatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagctagttcattctttgtgcagataatgactgactacaaatgtcaccaattcaaatgc 440
Query: 241 agtcaaagggactattccttttaccattaagtcgagaaataactatagtatggataaggt 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 agtcaaagggactattccttttaccattaagtcgagaaataactagagtatggataaggt 500
Query: 301 tttttattattattatgaatttttttaaagtctgtgtggtctattgaccaggctttaaca 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tttttattattattatgaatttttttaaagtctgtgtggtctattaaccaggctttaaca 560
Query: 361 attacctctggttcacaatgaaggtcttgggtgtacatgtaatgatagcacttaaaagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attacctctggttcacaatgaaggtcttgggtgtacatgtaatgatagcacttaaaagag 620
Query: 421 catagagcttcatttctaaagaagtgtgtgagtgtgtgcatgtgtgtatgtatgtgtg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catagagcttcatttctaaagaagtgtgtgagtgtgtgcatgtgtgtatgtatgtgtg 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
