Query= MSMg01no146_n13.b1 MSMg01no146_n13.b1 CHROMAT_FILE:
MSMg01no146_n13.b1 PHD_FILE: MSMg01no146_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:06 2005
(384 letters)
>mm_chr5_87440639_87441422
Length = 784
Score = 656 bits (339), Expect = 0.0
Identities = 366/383 (95%), Gaps = 13/383 (3%)
Strand = Plus / Plus
Query: 2 aaaatgaatgcacacccgacaaagtcataaaaatcaaaacattgcatagcactgtggtgt 61
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaaatgaatgcatacttgacaaagtcataaaaatcaaaacattgcatagcactgtggtgt 261
Query: 62 taggggttggatacactgttttgacttttctgctctttgtctgatgtaatattcgagtca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taggggttggatacactgttttgacttttctgctctttgtctgatgtaatattcgagtca 321
Query: 122 acttcattctgggatcctgtaggagctgcatccctggaggtaggccttggagtttgggga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acttcattctgggatcctgtaggagctgcatccctggaggtaggccttggagtttgggga 381
Query: 182 tggtattaaagtgcaaggttctattgaagtccccaaacaaagcattcggtacttattagg 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tggtattaaagtgcaaggttctattgaagtccccaaacaaagcattcggtacttatt--- 438
Query: 242 ggcttagctttgaaatattgagatggatgggtcaggcttgtttctggagacatttaccta 301
|||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 439 ----------tgaaatattgagatggatgggtcaggcttgcttctggagacatttaccta 488
Query: 302 gaaaagtctgtgcaggagctttgtggtaactgttatgccagcagatgtaggagtgatgct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gaaaagtctgtgcaggagctttgtggtaactgttatgccagcagatgtaggagtgatgct 548
Query: 362 gatgggtttggaaaatgtaagca 384
|||||||||||||||||||||||
Sbjct: 549 gatgggtttggaaaatgtaagca 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space: 290625
Effective search space used: 290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_n13.g1 MSMg01no146_n13.g1 CHROMAT_FILE:
MSMg01no146_n13.g1 PHD_FILE: MSMg01no146_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:06 2005
(600 letters)
>mm_chr5_87677257_87678256
Length = 1000
Score = 497 bits (257), Expect = e-144
Identities = 518/625 (82%), Gaps = 63/625 (10%)
Strand = Plus / Minus
Query: 1 tagtcaataaattccc-ttaccctttatctccaagcttgctgtcttca----ccccgtct 55
|||||||||||| ||| ||||| ||||||| |||||||||||||||| ||||
Sbjct: 707 tagtcaataaatcccctttaccttttatcttgaagcttgctgtcttcatgat----gtct 652
Query: 56 gccacaatcttcttacc-ctc-catctctatctttcatagttcagggctagaggagcctg 113
||||||||||||||||| | | |||||| || ||||| | ||||||||||||||| |||
Sbjct: 651 gccacaatcttcttaccacccacatctc--tcattcatggctcagggctagaggagtctg 594
Query: 114 agatgaatccagtgttttattggaaacatctgcaatgccggattcatatcct-ttgccaa 172
||| ||| |||||||||||||||||||||||| ||||| || || |||
Sbjct: 593 agaggaaaccagtgttttattggaaacatctg------------catattctgtt--caa 548
Query: 173 -atttcttgagccag--gtggatttccaaaattcaaattgttgaaatcagatatgcctgt 229
|||||||||||||| | || ||||||| ||||||||||||||| || ||| ||||||
Sbjct: 547 tatttcttgagccagcag-gg-tttccaaggttcaaattgttgaaaccacataggcctgt 490
Query: 230 ctaaaggcagttcagaatgttctgtatagaaataattttgagttcctgagcatgtatcac 289
||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 489 ctaaaggcatttcagaatgttctgtatagaaatagttttgagttcctgaacatgtatcac 430
Query: 290 cttcaggtaaattgt-aaaataagagtatatgaggaaagtgcaaggatatgccactagtt 348
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 429 cttcaggtaaatt-taaaaataagagtaaatgaggaaagtgcaaggatatgccactagtt 371
Query: 349 tt---ttttttaattt-tttgttattt-taacatt--ataagtgttctttcaattatg-a 400
|| |||||||||| ||| |||||| ||||||| || ||||||||| ||||||| |
Sbjct: 370 ttgggatttttaatttattttttatttctaacattccat--gtgttctttaaattatgca 313
Query: 401 cctgaccattatgattataaagaagtttttcaatatgttttttattctaccatttgcaga 460
|||||||| ||||||||||||||| || ||||||| |||||||| | |||||| | |
Sbjct: 312 -ctgaccatgatgattataaagaag-cttccaatatgacttttattccatcatttgaaaa 255
Query: 461 agatttta--ttttttctactataggctgggcccat--tgtcaatttttactgaagtagg 516
|| ||||| |||||||| |||||| | ||| ||| || || ||||| |||||||||
Sbjct: 254 ag-ttttattttttttctcctatagac-ggg--cataatgccaggttttattgaagtagg 199
Query: 517 cact--cata-tagcatccaaagtttggataagaagagtacattgcta-aagcattctct 572
|||| |||| | ||| |||||||| ||||||||| |||||||| | |||||||| ||
Sbjct: 198 cactcccatact---atcaaaagtttgaataagaagactacattgc-agaagcattccct 143
Query: 573 gagtatggaagtagaaccccccaaa 597
|||||| ||||||||||||||||||
Sbjct: 142 gagtatagaagtagaaccccccaaa 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
