Query= MSMg01no147_c24.b1 MSMg01no147_c24.b1 CHROMAT_FILE:
MSMg01no147_c24.b1 PHD_FILE: MSMg01no147_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:42 2005
(533 letters)
>mm_chr5_71064766_71065698
Length = 933
Score = 978 bits (506), Expect = 0.0
Identities = 524/530 (98%), Gaps = 2/530 (0%)
Strand = Plus / Plus
Query: 5 gaattctttggtgtttaaaaaa-cctctcatcaataagtccttgttgttgaaataaaatt 63
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttggtgttaaaaaaaacctctcatcaataagtccttgttgttgaaataaaatt 264
Query: 64 tggtatgtataggtatgtttttgaatgagtgttttatatatttttatttgattctatttt 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggtatgtataggtgtgtttttgaatgagtgttttatatatttttatttgattctatttt 324
Query: 124 tatttgagccttggacaatctacgtaatactctatcactgaagtatatgcccagtctctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatttgagccttggacaatctacgtaatactctatcactgaagtatatgcccagtctctt 384
Query: 184 tgaaatcttcagtgtaagaatctattgaaataaatgcaaagctatactatgagcaaaagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaaatcttcagtgtaagaatctattgaaataaatgcaaagctatactatgagcaaaagc 444
Query: 244 taaggaaaataaacctatatttaaaaaatgtatgtgagaaaatgatggggtagttcataa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaggaaaataaacctatatttaaaaaatgtatgtgagaaaatgatggggtagttcataa 504
Query: 304 ctgtggcagcaagcagtgtaatgctgtaggagttatactgtgatatatgaatatgacaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgtggcagcaagcagtgtaatgctgtaggagttatactgtgatatatgaatatgacaag 564
Query: 364 agaatttaacacacaatattgatcatattttctttatcctcttatagatgatggctaatg 423
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaatttaaga-ataatattgatcatattttctttatcctcttatagatgatggctaatg 623
Query: 424 catatattcatgctgagtgtggaattgtgttcctggtactgacaaactctctttcctata 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 catatattcatgctgagtgtggaattgtgttcctggtactgacaaactctctttcctata 683
Query: 484 cagaaagactatctcatctatcacaaggtactaaattatatttggttggc 533
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagaaagactatctcatctatcacaaggtactaaattatatttggttggc 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_c24.g1 MSMg01no147_c24.g1 CHROMAT_FILE:
MSMg01no147_c24.g1 PHD_FILE: MSMg01no147_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:42 2005
(640 letters)
>mm_chr5_71185450_71186489
Length = 1040
Score = 1207 bits (624), Expect = 0.0
Identities = 636/640 (99%)
Strand = Plus / Minus
Query: 1 acattgtctctttaaattagccatcctagattaaataatcactttgaaaacagcaaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 acattgtctctttaaattagccatcctagattaaataatcactttgaaaacagcaaaagt 980
Query: 61 tagaagtccaggcctttccattactctatgagagcaagattgctatatactcactaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 tagaagtccaggcctttccattactctatgagagcaagattgctatatactcactaacaa 920
Query: 121 aatattcatcaaatttaaatatatacatatattatttatgtaaaaatagaaatatatgtt 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 aatattcattaaatttaaatatatacatatattatttatgtaaaaatagaaatatatgtt 860
Query: 181 atttatatataaaaatatagtctaaccctaaaggcctagatctaacccagaaaaaaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 atttatatataaaaatatagtctaaccctaaaggcctagatctaacccagaaaaaaaaat 800
Query: 241 ctgttaaacattttattgaatataaagttgtaattttggtgaacaaaattttagtgaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ctgttaaacattttattgaatataaagttgtaattttggtgaacaaaattttagtgaaca 740
Query: 301 atttttagatatctgtaatattttagattttacacatgaaatattacctctgatttatat 360
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 739 atttttagatatctgtaatattttagattttacacatgaaatattaattctgatttatat 680
Query: 361 tcatataactgatttcaaattaaaattattttcagactttgtaacaggtttttgttgcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcatataactgatttcaaattaaaattattttcagactttgtaacaggtttttgttgcta 620
Query: 421 catttcataacgagtatattactattgaaataaataaataatatgatgcaaaactaagtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 catttcataacgagtatattactattgaaataaataaataatatgatgcaaaactaagtt 560
Query: 481 tagggtttctttcaatccttgatatcattaaccattcattctgtgctgctttgcagtgag 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 559 tagggtttctttcaatccttgatatcattaaccattcattctgtgctactttgcagtgag 500
Query: 541 acccacagtgattgaaacagatgtttatgtaaacagcattggacctgtggatcccataaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acccacagtgattgaaacagatgtttatgtaaacagcattggacctgtggatcccataaa 440
Query: 601 catggtaagagctgtgacaatacagggttcatgaatgtat 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 catggtaagagctgtgacaatacagggttcatgaatgtat 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
