BAC Information

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BAC

Clone NameMSMg01-147I03
Chromosome5 (Build37)
Map Location 6,823,372 - 6,823,624
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041208, EG435830
Downstream geneLOC100042651, 4921511H03Rik, LOC242823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147I03.T7 (MSMg01no147_i03.b1)MSMg01-147I03.TJ (MSMg01no147_i03.g1)
ACCAG350762AG350763
length723721
length of high quality
(start - end)
233 (130 - 362)255 (73 - 327)
definitionCHROMAT_FILE: MSMg01no147_i03.b1 PHD_FILE: MSMg01no147_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:07 2005CHROMAT_FILE: MSMg01no147_i03.g1 PHD_FILE: MSMg01no147_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTCCCCTCAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAG
AGGATCCGCGGAATTCTACCAGATCTTTCAAAAAAGAGCTAATACCAACA
CTTCTCAAATCATTCCACAAAATCAAAACAGAAGGAATATTATTTTATGA
GCTCATAGTCATACTTTATACTCAAACAACATAAAGACTCAACAAAGAAA
TAGAAGTACAGATTAAATTTCTTCATGAACTTTGATGGGAAAAATAGTGA
ATAAAACACTCACAAACTAAATCCAAAGCACATTAAAAAGCTCATCACTA
TGATAAAGTATACTTCACTCCAGAGACAGAGGAGTGGTTCAGCATGCAAA
AATTTGTCAGTGAGATTCACCATAAAAATCAAACTGACAAAAAAACACAA
GACCATCTCATTCAATTCTGACCAAGCCTCCCCCCCCTTTTATTGCATAT
TTTCTTTATTTACATTTCACATGGTATCCCCTTTCTATGTCTCCCCTCTG
GACACCTCCTATCCCATCCCACATCCCCCTGCCTATATGAGGGTGCTCCC
CCAACCACCCACCCAATTTCAGCCTTCCCCCCCCGGCAATTACCCTAATA
TGCCTCACTCTACCCTCCCTCCGTTCCCACCGCCCCTTCCTCTTACCGCT
GGATTCCCCCCCCCATCCCCCGAACCCCCCCCCCCCCCGCCTACCCGCAA
ACCCTCCCCGCGCCCCCCCTTGC
AATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGGTGTTTTAATGATTACAAAGGTCA
CAGAGATTGAGGCTATATGCGAAATACCAGGTAACTGCTCAGAAAGTGCT
GAGTTTGGTTAATTTCTCAAAATGATTACTGAGCTTTTAGTTATATCTTT
ATACTTTCATTACTTCTCTTAAAATGTTTCCTCAAATGATTGTGACATTG
TAGTTCTCTGAGAACTTGAAAAGGTGTTTCTTGTTTGTTTGTTTGTTTGT
TTGTTTGTTTGTTTTTTTCTTTTGTTTGGCTGTTTGCTTGGCTTGGTGTT
CACCCCCCCCCCTACTTCCCCCCTCCCTCTTTTCTTCTTCCCCCCCCTCT
ATCTCCCTTTCCCCCCCTCCTTTTTTTTCTTTTTCCCCTCTCCTTCCCCT
CCTCCCCCTTTCCCCCTTCTCCCTTATTTCCCTTTCCTCACCCTCCTCCC
CCTTTCCCCTCTTTACCCCCTTCCCCCTTCTTTTCCTTCACCCCTCTCCT
CCCCTCTTCCCCTCTCTCATTCCTCCCCCTCCCCCCCCTCCTTCTTATTT
TTTTCACCCCTACTTCTCCCCCCTTTTCTTTCCCCTTTCCCTTTCTTCCC
CTCCTCCCCCCTCTCCTCCTTTTTCCCCCCCTCCCCTTCCTCTCTTTACT
TTTTCCCTTCCTCTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_i03.g1 MSMg01no147_i03.g1 CHROMAT_FILE:
MSMg01no147_i03.g1 PHD_FILE: MSMg01no147_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:07 2005
         (255 letters)



>mm_chr5_6823217_6823871
          Length = 655

 Score =  427 bits (221), Expect = e-124
 Identities = 245/253 (96%), Gaps = 3/253 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   tggtgttttaatgattacaaaggtcacagagattgaggctatatgcgaaataccaggtaa 62
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 408 tggtgttttaatgattacaaaggtcactgagattgaggctatatgcaaaataccaggtaa 349

                                                                       
Query: 63  ctgctcagaaagtgctgagtttggttaatttctcaaaatgattactgagcttttagttat 122
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 348 ctgctcagaaagtgctgagtttggttaatttctcaaaataattactgagcttttagttat 289

                                                                       
Query: 123 atctttatactttcattacttctcttaaaatgtttcctcaaatgattgtgacattgtagt 182
           |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 288 atctttatacttccattacttcacttaaaatgtttcctcaaatgattgtgacattgtagt 229

                                                                       
Query: 183 tctctgagaacttgaaaaggtgtttcttgtttgtttgtttgtttgtttg-tttg-tttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 228 tctctgagaacttgaaaaggtgtttcttgtttgtttgtttgtttgtttgttttgttttgt 169

                        
Query: 241 ttt-tttcttttg 252
           ||| |||||||||
Sbjct: 168 tttctttcttttg 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)