Query= MSMg01no147_k20.b1 MSMg01no147_k20.b1 CHROMAT_FILE:
MSMg01no147_k20.b1 PHD_FILE: MSMg01no147_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:19 2005
(576 letters)
>mm_chr5_91771288_91772263
Length = 976
Score = 698 bits (361), Expect = 0.0
Identities = 388/397 (97%), Gaps = 1/397 (0%)
Strand = Plus / Minus
Query: 5 ggaattcataaataattatagggcaggccaaagcagtgactagttaaagcagaggaatga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggaattcataaataattatagggcaggccaaagcagtgactagttaaagcagaggaatga 337
Query: 65 ggtatcaaagttccaagaacacaccgaagaacagctgcttccctttgtcagtgcttctga 124
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 336 ggtagcaaagttccaagaacacaccaaagaacagctgcttccctttgtcagtgcttctga 277
Query: 125 tcttcatggttgtggttagccccatttaacctcggtcccaaaatatgaaatgaaaatcag 184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 276 tcttcatggttgtggttagccccatttaacctcggtcccaaaacatgaaatgaaaatcag 217
Query: 185 aagaactaagcgttgtctgctgttccaagcagtgttaaagatcttaccttctcctccagc 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 216 aagaactaagcgttgtctgctgttccaagcagtgttaaagatcttgccttctcctccagc 157
Query: 245 agctggaatgtaaatatccctttgtcaagtatatctacaccatatgcatggcctgtccct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 agctggaatgtaaatatccctttgtcaagtatatctacaccatatgcatggcctgtccct 97
Query: 305 taggcttttaggagttgtctggggtatcagacagtttcacagtgctatgttcaagtaacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 taggcttttaggagttgtctggggtatcagacagtttcacagtgctatgttcaagtaacc 37
Query: 365 cttgtctccgcccactagtgaactacaaaattacaaa 401
||||||| || | ||||||||||||||||||||||
Sbjct: 36 cttgtct-tgcttagtagtgaactacaaaattacaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_k20.g1 MSMg01no147_k20.g1 CHROMAT_FILE:
MSMg01no147_k20.g1 PHD_FILE: MSMg01no147_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:19 2005
(337 letters)
>mm_chr5_91627810_91628546
Length = 737
Score = 636 bits (329), Expect = 0.0
Identities = 335/337 (99%)
Strand = Plus / Plus
Query: 1 cagaaggaagcagagctctatgaacatcacaagagtaactcagtctttctgaccaggctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaggaagcagagctctatgaacatcacaagagtaactcagtctttctgaccaggctg 260
Query: 61 gagcccccgttcttaaatcggcccctgtgtccacacggctagaagcgttttcatgcagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcccccgttcttaaatcggcccctgtgtccacacggctagaagcgttttcatgcagaa 320
Query: 121 gaggacatatgagcggctaaagggaatagacaaaggaggaagatgataaaatataattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggacatatgagcggctaaagggaatagacaaaggaggaagatgataaaatataattaa 380
Query: 181 atagacaaccccatgtcaaacaacttaaacgtctataacgctcagtacttctagccattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagacaaccccatgtcaaacaacttaaacgtctataacgctcagtacttctagccattt 440
Query: 241 ttgcaacctttaatgcttaccttttggattttatgttaataaaaactgaggctattttaa 300
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tcgcaacctttaatgcttaccttttggagtttatgttaataaaaactgaggctattttaa 500
Query: 301 acgctcctgactttgttagtatctaggtttctttctt 337
|||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgctcctgactttgttagtatctaggtttctttctt 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
