Query= MSMg01no147_l04.b1 MSMg01no147_l04.b1 CHROMAT_FILE:
MSMg01no147_l04.b1 PHD_FILE: MSMg01no147_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:21 2005
(522 letters)
>mm_chr5_16146034_16146955
Length = 922
Score = 750 bits (388), Expect = 0.0
Identities = 409/416 (98%)
Strand = Plus / Minus
Query: 95 attattaaccctctagtagatgtagagttgttaaaaatcttttcccattctgtatgctgt 154
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 922 attattaaccctctagtagatgtatagttgttaaaaatcttttcccattctgtatgctgt 863
Query: 155 cactttgcctaaacgaaagtgtcctttgtggtgcaaaagcttttcagtttcatggggttt 214
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 862 cactttgcctaaacgaaagtgtcctttgtggtgcaaaagcttttcagtttcatggggtct 803
Query: 215 gatttctcaactgttaatcttagtgcctttctgttcagaaatccctttcctctgaaaatg 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gatttctcaactgttaatcttagtgcctttctgttcagaaatccctttcctctgaaaatg 743
Query: 275 agatgttttgaaggcgtatttatcatattgctgggaacctagaaggcctgtgtacatctc 334
|||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct: 742 agatgttttgaaggcgtatttatcatatcaccgggaacctagaaggcctgtgcacatctc 683
Query: 335 agtgctgaactggtcttgatttgctaatcttggattgatcttggtgcttttcaaaaatag 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agtgctgaactggtcttgatttgctaatcttggattgatcttggtgcttttcaaaaatag 623
Query: 395 aaggtaagaattaggcagaggtgtcaacagcctggctgggtggcaaacggaatgtaccag 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaggtaagaattaggcagaggtgtcaacagcctggctgggtggcaaacggaatgtaccag 563
Query: 455 cccatacccaaggaggccttaagcaaatgctggttctggatgtctctaaaatgccc 510
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 562 cccatacccaaggaggccttaagcaaatgctagttctggatgtctctaaaatgccc 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_l04.g1 MSMg01no147_l04.g1 CHROMAT_FILE:
MSMg01no147_l04.g1 PHD_FILE: MSMg01no147_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:21 2005
(647 letters)
>mm_chr5_15982456_15983501
Length = 1046
Score = 1199 bits (620), Expect = 0.0
Identities = 641/650 (98%), Gaps = 6/650 (0%)
Strand = Plus / Plus
Query: 1 tgttcatatttaattaatataatcataaacattctacttttaaaatttatatttaataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgttcatatttaattaatataatcataaacattctacttttaaaatttatatttaataaa 259
Query: 61 tattcaaatattaaaataattatatttaatttaaaacttgcatattaaaactgtgattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tattcaaatattaaaataattatatttaatttaaaacttgcatattaaaactgtgattta 319
Query: 121 attttatcatcattagtagtagtattttggttgtggtagctcaatgttcttagtattaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attttatcatcattagtagtagtattttggttgtggtagctcaatgttcttagtattaca 379
Query: 181 -aaattaatttaaaaaatatttcgtttataaaatataataaaagtttgatatttttcttt 239
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaattaatttaaaaaatattttgtttataaaatataataaaagtttgatatttttcttt 439
Query: 240 aactctacatct--aaaaaattttttttctagaaaatattaacattatatgttagttatt 297
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 440 aactctacatttttaaaaaattttt---ctagaaaatattaacattatatgttagttatt 496
Query: 298 attttgttttcttcctctaacatttacagttttagtccttacatgagttattacattgta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 attttgttttcttcctctaacatttacagttttagtccttacatgagttattacattgta 556
Query: 358 aaagaaaactaataacctgatgattgacacaattttcttgtttctaattttaatttttgt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaagaaaactaataacctgatgattgacacaattttcttgtttctaattttaatttttgt 616
Query: 418 ttggtaatacattattgattatgtattggttgctgtaatctagcatatatgttttatcat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttggtaatacattattgattatgtattggttgctgtaatctagcatatatgttttatcat 676
Query: 478 atttagaaatgtcctttttatcactagacttgaattactattttaaaattaggattagat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atttagaaatgtcctttttatcactagacttgaattactattttaaaattaggattagat 736
Query: 538 actgaaattcaactttatttaaaaatttgaatttattaatagattttgaattttatgaaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 actgaaattcaactttatttaaaaatttgaatttattaatagattttgaattttatgaaa 796
Query: 598 tgtttgcagtatattgagagcatatttttccttatttatgatactgtgta 647
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 797 tgtttgcagtatattgagagtatatttttccttatttatgatactgtgta 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1046
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1036
Effective search space: 659932
Effective search space used: 659932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
