BAC Information

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BAC

Clone NameMSMg01-147L08
Chromosome5 (Build37)
Map Location 117,694,172 - 117,694,318
singlet/doubletsinglet
Overlap geneTaok3
Upstream geneCcdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3
Downstream genePebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147L08.T7 (MSMg01no147_l08.b1)MSMg01-147L08.TJ (MSMg01no147_l08.g1)
ACCAG350915AG350916
length896745
length of high quality
(start - end)
166 (50 - 215)147 (83 - 229)
definitionCHROMAT_FILE: MSMg01no147_l08.b1 PHD_FILE: MSMg01no147_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:22 2005CHROMAT_FILE: MSMg01no147_l08.g1 PHD_FILE: MSMg01no147_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCG
CGGAATTCATGTGTGTATGCCTTCTTGAATTCATGTGTGCATGTGTTCTT
GAATTCATGTGTGCATGAGTTCATGTATGCATGTGTGCACAAATTCATGT
GTATATGAGTGCATGTGTTCATGCATTCATGAGTGCAAGTGTGTGTGTGT
GTGTGTGTGTGTGTGCGTGATAGAGAGAGATAGATAGAGAGAGAGAGAGA
TAGCCACCGCCCCCCTACTAATTTTTTTTTTTATTTCCTTTTTTTCTTTT
CCCTCTTTTTTTTCACTCCATCCCCCCCCTTTTTTTTTCCTCCCTTCTTT
CACTCTTCCCTTCCCCTCCCTTTTTTTTTTTTTTTTCTTCTCTCTCCTTC
TTTTTCTTTTTTCTCCCCTCCTTCCTCCTTTTCTCTCTTCCACCCCCCCC
CCTTCTCCTTCCTTTTATTTTTATATTTATCCCCCCTCCTCCTCTCTTTT
CCCCCCCTTTTATCCTCTTCTTCCCCTTTCAACCCTACTTACTCGTTTTT
TTCTCCCCTTACTTTTTTTTATAAACCATTCTATCCTATATCTTCTACAC
TCTTTCTTTCAATCTATCTCTCTCTTCTCCTTCCTTCATTTTTTCCCTCT
TCTCCCTTCCCACTTTTTTCACCCCATTAAACACTTTTTCTCCTACTATT
TTACCTTCTTTCACCTTTCCACCCTTCCCCATATTTCCTTCTCCTCTTAT
TTTCTACCTCCTATTCCTCTCCATATTTCTCTCTTCCATTTATTCCTCTC
TTCCCCGCTCTCTCTTTTTTTTTTCCCCATTATCCCATTTCTTTCACCCT
ATCCCCCCCTTTTTTCTATATCTTTCTATTTTGCCCACTACTTATG
NNCCCACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTTAAGGTGCCCC
AGATAACCATGCCCCCCAACTGCAAAAGTCCATAGCTCATGGCCTTCGCA
CACCTCATTCAGAGACACAACATAAAGAACTATACTGAGAGCAGACAGTG
CCCTACTATGGCCTCTGTTACGCTTGTGTGGAAAAGGTGGGTTTGTAAGA
CACATCAGATAAGAGCTAACTGCTGGTGCTAGTTAGCAGGCCTATTCAGA
AACCATTCTTGTCATTTATTGGGCTCATAATGGAAAGGTGAGTTTGCGTG
TTTCTTTCTTTCTGCTGATCACCTTCAGATCGCTCTGGGACTTGTCATCA
GCTCTACCTTAATGAAAACCACAGACACCCTCTACTGCTTTTCACCACCC
TATTGGTTGACCCATCAACCTATCAATCTTATTCTTGCCATCAACTGTCA
GTCTGCCCGGTGCCTTGACTGCTGCTGATTGCTTCCCCTGAGTCCCCCGG
CCCTGTCCTTACTTTAACGCTATTTATGCCCCCTTACTCCTTCTCAATTG
AAGTGTTACTCATTTTCCATAATTACCCTACTCTTTTCTCATCTTCCTAC
TGTCTTGCCCTCACACACTTCTTTTGCTTCTTGGTCCCCCGATACCATTA
CCCACGCGTCATACCCGAACTGATATACCTTGCCCACTCAGCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_l08.g1 MSMg01no147_l08.g1 CHROMAT_FILE:
MSMg01no147_l08.g1 PHD_FILE: MSMg01no147_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:22 2005
         (147 letters)



>mm_chr5_117693972_117694518
          Length = 547

 Score =  261 bits (135), Expect = 1e-74
 Identities = 144/147 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgttttaaggtgccccagataaccatgccccccaactgcaaaagtccatagctcatgg 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tctgttttaaggtgccccagacaaccatgccccccaactgcaaaagtccatagctcatgg 288

                                                                       
Query: 61  ccttcgcacacctcattcagagacacaacataaagaactatactgagagcagacagtgcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 287 ccttcgcacacctcattcagagacacaacataaagaactatactgagagcagacagtgtc 228

                                      
Query: 121 ctactatggcctctgttacgcttgtgt 147
           |||||||||||||||||| ||||||||
Sbjct: 227 ctactatggcctctgttaggcttgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)