BAC Information

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BAC

Clone NameMSMg01-147L10
Chromosome5 (Build37)
Map Location 117,693,981 - 117,694,318
singlet/doubletsinglet
Overlap geneTaok3
Upstream geneCcdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3
Downstream genePebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147L10.T7 (MSMg01no147_l10.b1)MSMg01-147L10.TJ (MSMg01no147_l10.g1)
ACCAG350919AG350920
length864734
length of high quality
(start - end)
190 (51 - 240)338 (82 - 419)
definitionCHROMAT_FILE: MSMg01no147_l10.b1 PHD_FILE: MSMg01no147_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:22 2005CHROMAT_FILE: MSMg01no147_l10.g1 PHD_FILE: MSMg01no147_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGTGTGTATCTGTTCTTGAATTCATGTGTGCATGTGTTC
TTGAATTCATGTGTGCATGAGTTCATGTATGCATGTGTGCACAAATTCAT
GTGTATATGAGTGCATGTGTTCATGCATTCATGAGTGCAAGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGACAGAGAGA
CTTATCCCCCCTCTCCCTTTCTCACCATATTTCTTATTTCCATCCTTTCC
CTTCCCACCCTTTTTTCTCTCCCTTACCCTTTCTCTTCTTTTCCTCCCTT
TTTTCTCTTTTACCCTCCCCCCGCCTTATTTTTTTTTTTTCCTTTCTCCC
CCCCCTTTTCTTTCTTCCTTCCCCTCCTTTCTCTTTTTCTCCCCCCCCCC
CTATTTTCTTCTTCCCTTCTTTTTCTTCTTTTATTACTCCCCCTTCCCTT
CCTCCTTTTCCCCCCCTTTTTTTCTTTCACTGCCCCCTTCATCACCTCTC
CCACCTTTTTTTACCCCCATACTTTTTTTTTTTACACCCTTTTTTTCTTA
TCTTCTCCTCCCTTTTTTTCCATCTTACCCCCCTTCCCCTTCGGTCTTTA
TATCTCACCTCCCTCCTCAGTTTTTCCCCCTTCAAAATTTTTCTAAACTT
TTTCCTCTCTTTCTCTTCCCCCTTCCACTTTCTTTTAATTCTTTTTTCTC
CTCCTATTCTATATATTTCCTTTCATATTCTCTTTCTCCCCGTTTTTTTT
TTTATTCCCCTCTCCCTTTTTTCCTCTATCTCTACTTTCATTTTTACCTC
TTCCTCTCACCTTN
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTTAAGGTGCCCCA
GACAACCATGCCCCCCAACTGCAAAAGTCCATAGCTCATGGCCTTCGCAC
ACCTCATTCAGAGACACAACATAAAGAACTATACTGAGAGCAGACAGTGT
CCTACTATGGCCTCTGTTAGGCTTGTGTGGAAAAGGTGGGTTTGTAAGAC
ACATCAGAGAAGAGCTAACTGCTGGTGCTAGTTAGCAGGCCAAGTCAGAA
ACCATTCTTGTCATTTATTGGGCTCATAATGGAAAGGTGAGTTTGTGTGT
TTCTTTCTTTCTGCTGATCACCTTCAGATCGCTCTGGGACTTGTCAGCAG
CTCTACCAGAAAGAAAACCTCACACCCCGGGTACAGCCAATCAGCCACCC
AATGGTTGACACATCAACCAATCAATCTATTCTTGCCATCAACTGTCAGT
CTGGCCGGTGGCTTGACTGCTGCTGATTGGTTCCCCAGAGTCCCACGGCC
CTGCTCTTAATTTAATGCTATTTATGCCACCTTAGTCCTTTTCACATTGA
AGTGGGACTCATTTTCTAAAATTACACACTTCTTCCCATTATTTTAGTGC
CATGGCTCAGACATTCTTTGGGTCCGGTGTTCGAGACCTTATAGAGGCTA
AACCGATTGAAATACTTGATCGCCGCCATGATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_l10.g1 MSMg01no147_l10.g1 CHROMAT_FILE:
MSMg01no147_l10.g1 PHD_FILE: MSMg01no147_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:22 2005
         (338 letters)



>mm_chr5_117693781_117694518
          Length = 738

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgttttaaggtgccccagacaaccatgccccccaactgcaaaagtccatagctcatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tctgttttaaggtgccccagacaaccatgccccccaactgcaaaagtccatagctcatgg 479

                                                                       
Query: 61  ccttcgcacacctcattcagagacacaacataaagaactatactgagagcagacagtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccttcgcacacctcattcagagacacaacataaagaactatactgagagcagacagtgtc 419

                                                                       
Query: 121 ctactatggcctctgttaggcttgtgtggaaaaggtgggtttgtaagacacatcagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctactatggcctctgttaggcttgtgtggaaaaggtgggtttgtaagacacatcagagaa 359

                                                                       
Query: 181 gagctaactgctggtgctagttagcaggccaagtcagaaaccattcttgtcatttattgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gagctaactgctggtgctagttagcaggccaagtcagaaaccattcttgtcatttattgg 299

                                                                       
Query: 241 gctcataatggaaaggtgagtttgtgtgtttctttctttctgctgatcaccttcagatcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gctcataatggaaaggtgagtttgtgtgtttctttctttctgctgatcaccttcagatcg 239

                                                 
Query: 301 ctctgggacttgtcagcagctctaccagaaagaaaacc 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctctgggacttgtcagcagctctaccagaaagaaaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)