Query= MSMg01no148_d22.b1 MSMg01no148_d22.b1 CHROMAT_FILE:
MSMg01no148_d22.b1 PHD_FILE: MSMg01no148_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:05 2005
(582 letters)
>mm_chr5_132871026_132872008
Length = 983
Score = 911 bits (471), Expect = 0.0
Identities = 537/583 (92%), Gaps = 40/583 (6%)
Strand = Plus / Plus
Query: 4 gaattcccctcttaa----tttaccgcctaagccaggaagttcagggtataatccaaaga 59
||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcccctcttaaaagc---acagcctaagccaggaagttcagggtataatccaaaga 260
Query: 60 ccaacccaagtgttaaacaacagcacaggccagccaagctggccactggagtgggagcgg 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ccaacccaagtgttaaacaacagcacaggccagccaagctggccactggagtgggagcag 320
Query: 120 gagcgggagcagcaggagcagcaggagcagcaggagcagcaggagcagcagcagcagcag 179
||||||||||||||||||||||||| ||||||||
Sbjct: 321 gagcgggagcagcaggagcagcagg---------------------------agcagcag 353
Query: 180 gagcagcaggagcagcaggagcagcaggagcagcaggagcagcagcagcagcagcagcag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gagcagcaggagcagcaggagcagcaggagcagcaggagcagcagcagcagcagcagcag 413
Query: 240 cagcaggaggaggaggatgtgctgtcaactttgctcatatgctagctccctcagatatct 299
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cagc------aggaggatgtgctgtcaactttgctcatatgctagctccctcagatatct 467
Query: 300 tcagatcaatatatctttctacagagttgggccgtatttggtagcagaccattcttgtat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tcagatcaatatatctttctacagagttgggccgtatttggtagcagaccattcttgtat 527
Query: 360 gtccagtattggaccatgcccccatctcagtacctggctatttctcagcttttaaaacca 419
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gtccagtattggaccatgccaacatctcagtacctggctatttctcagcttttaaaacca 587
Query: 420 gttcaaatactgcctcaaagactaggtgaagcctttctctgataagggaaaggctgatct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gttcaaatactgcctcaaagactaggtgaagcctttctctgataagggaaaggctgatct 647
Query: 480 agttgtcctctgacatccgcattcttgctctgacatcgtgcacccaaccccaacatgaaa 539
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 648 agttgtcctctgacatcagcattcttgctctgacaccgtgcacccaaccccaacatgaaa 707
Query: 540 taattaataaaatgtaaaagcaattttttaaataacacaatgc 582
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 taattaataaaatgtaaaagcaattttttaaataacacaatgc 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space: 556556
Effective search space used: 556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_d22.g1 MSMg01no148_d22.g1 CHROMAT_FILE:
MSMg01no148_d22.g1 PHD_FILE: MSMg01no148_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:05 2005
(453 letters)
>mm_chr5_133007625_133008477
Length = 853
Score = 855 bits (442), Expect = 0.0
Identities = 448/450 (99%)
Strand = Plus / Minus
Query: 1 tctttaggagggattttccttaaattcagatctgaacttctcctaagtagtcttcagatc 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 542 tctttaggagggattttccttaaattcagatctgaacttctcctaagaagtcttcagatc 483
Query: 61 catttcactccacatctggaggctctgctttttaagccaccatcttggtgttctttgcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 catttcactccacatctggaggctctgctttttaagccaccatcttggtgttctttgcac 423
Query: 121 agatgttgtccctagtggcgagttcttttctgcccctcattttgcaaatggaagtacttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agatgttgtccctagtggcgagttcttttctgcccctcattttgcaaatggaagtacttc 363
Query: 181 ccaaggatggacgaatggtctgtcccagatcatcctgggggctagagatcccaacattac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ccaaggatggacgaatggtctgtcccagatcatcctgggggctagagatcccaacattac 303
Query: 241 ccaatgaaagtaggagactcttttcccttagtgctgggcagtacaaggattgaggattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccaatgaaagtaggagactcttttcccttagtgctgggcagtacaaggattgaggattat 243
Query: 301 gggagaaagtgctgttaaattgtaaatcagcccccgcccccagccttgcaattgctttgt 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 242 gggagaaagtgctgttaaattgtaaatcagcccccgcccccagccttggaattgctttgt 183
Query: 361 agtctctgatgaccttgaactccttatcctcttacatctaccgagtccatggggttactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 agtctctgatgaccttgaactccttatcctcttacatctaccgagtccatggggttactg 123
Query: 421 gtatgcaccaccagccctagtttagacact 450
||||||||||||||||||||||||||||||
Sbjct: 122 gtatgcaccaccagccctagtttagacact 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
