XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTCGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAGCGGA
GGCCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCTCTCC
TCAGAGATTACCGGCTCTCCACATCTCCCCCTTTTTATTTTATTAAAATT
TGAGGCTGGTCTAGTCCTGTGTAATTATGCCCATCTGCTGTGGCTCCTGT
CTTAGGTCGTTCCTCCAATGTCACAGCCTTTCCTGTCATAGGGTAACCCT
ATCGCCACCGGGCCCCGTGTCTTAGGTTGATCTGTGCATGAGGAAAGTTG
CCCGTCCCTGGATACCGCAGTGCTATGTGACATTAACTACTAAATGACCT
AGGGCGAACTCTATAAAAGAGGCCAGCCACCAATGTCAATTAATCTTTGA
GCATAGATAGCCAGATTTCAGGGGAGGCCCCTTGCTCGATGGCAGCAAGT
GCTTGAGTTATCACAACCTTGTCACGTGTTTGTTGGGTTCTGAGCTTGCA
AACCAACCAGAGCATGACCACAAGTCCACAGCAGGTGGCAACGCCAAATA
AACCTACCCCCACCCATTCCTTAAAATAAGAAAAGGCAGATGAAATCCAG
GAGGAGAGGCCCTCTGTCAATGACAGGTCCACTCGTGTCGAGTTGATCTT
T

NNNCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTATGAGACAAAGTCTTTC
TTTTCATTAAATTGATTATTAAAAATAAAAAATAGGATAAGTTTTATCAA
TCCAAGTGTGGTTTATGATTGCTAGGAACCCCTTTGTTCTCTCTCGGAGT
AGTATATATTACTGTTACCTATATCTTTTCTCACTAAGTCTTTCATGAGT
CATTTGTTTTATACGAAAATAGATAACATTGTTGTTTTATGCATATGAAG
ACAATAAGGCAAGGAAAATTTCTACCCTGCTCAAGGCCATGTAGTTACTT
AAGCTACAGAACTTTGACTAGAATTTTCTAGGTCTTGGGCTCAGGATCAT
ACCATCCACATGGTTATATGCTGCGCGACCACATTATTAAAATTAAAAAG
CCAGTTGGTTACATTGAGGGACATTATGGTAGAAATTAGTGAGGCAACTA
ATTGGGTAGAGGAACTTTGATGTCTTTTATAATTCACTAAACTCAACAAG
GTTTGACCTGTTGTTGGAATTTTTGATTTCTCCTGGGCTCTCTTGATTTT
AATCTGCAGTACTTTGAAAGGTCCTAGAAGGGCATCACAAAAAGCAATTC
ATCATGCTGGCCAGCAGAGATCTGTAGTTCCCTGGAGCAAAGCAGTGAAC
CTTTGAGT

Query= MSMg01no148_g02.g1 MSMg01no148_g02.g1 CHROMAT_FILE:
MSMg01no148_g02.g1 PHD_FILE: MSMg01no148_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:16 2005
         (629 letters)



>mm_chr5_71848480_71849508
          Length = 1029

 Score = 1141 bits (590), Expect = 0.0
 Identities = 620/630 (98%), Gaps = 1/630 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtatgagacaaagtctttcttttcattaaattgattattaaaaat-aaaaaataggat 59
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 885 cagtatgagacaaagtctttcttttcattaaattgattattaaaaataaaaaaataggat 826

                                                                       
Query: 60  aagttttatcaatccaagtgtggtttatgattgctaggaacccctttgttctctctcgga 119
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 825 aagctttatcaatccaagtgtggtttatgattgctaggaacccctttgttctctctcaga 766

                                                                       
Query: 120 gtagtatatattactgttacctatatcttttctcactaagtctttcatgagtcatttgtt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gtagtatatattactgttacctatatcttttctcactaagtctttcatgagtcatttgtt 706

                                                                       
Query: 180 ttatacgaaaatagataacattgttgttttatgcatatgaagacaataaggcaaggaaaa 239
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 705 ttatacgaaaatagataacattgttgttttatgcatatgaagaaaataaggcaaggaaaa 646

                                                                       
Query: 240 tttctaccctgctcaaggccatgtagttacttaagctacagaactttgactagaattttc 299
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tttctaccctgctcaagatcatgtagttacttaagctacagaactttgactagaattttc 586

                                                                       
Query: 300 taggtcttgggctcaggatcataccatccacatggttatatgctgcgcgaccacattatt 359
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 585 taggtcttgggctcaggatcataccatccacatggttatatgctgtgtgaccacattatt 526

                                                                       
Query: 360 aaaattaaaaagccagttggttacattgagggacattatggtagaaattagtgaggcaac 419
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 525 aaaattaaaaagccagttggttacactgagggacattatggtagaaattagtgaggcaac 466

                                                                       
Query: 420 taattgggtagaggaactttgatgtcttttataattcactaaactcaacaaggtttgacc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 taattgggtagaggaactttgatgtcttttataattcactaaactcaacaaggtttgacc 406

                                                                       
Query: 480 tgttgttggaatttttgatttctcctgggctctcttgattttaatctgcagtactttgaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgttgttggaatttttgatttctcctgggctctcttgattttaatctgcagtactttgaa 346

                                                                       
Query: 540 aggtcctagaagggcatcacaaaaagcaattcatcatgctggccagcagagatctgtagt 599
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 345 aggtcctagaagggcatcacaaaaagcaattcatcatgctggccaacagagatctgtagt 286

                                         
Query: 600 tccctggagcaaagcagtgaacctttgagt 629
           ||||||||||||||||||||||||||||||
Sbjct: 285 tccctggagcaaagcagtgaacctttgagt 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)