Query= MSMg01no148_j21.b1 MSMg01no148_j21.b1 CHROMAT_FILE:
MSMg01no148_j21.b1 PHD_FILE: MSMg01no148_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:34 2005
(565 letters)
>mm_chr5_74431081_74432045
Length = 965
Score = 1035 bits (535), Expect = 0.0
Identities = 553/559 (98%), Gaps = 2/559 (0%)
Strand = Plus / Minus
Query: 9 tctggtcagtttctccgacttcctgaaactattttgagtgttttactttcctatgtaagg 68
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 tctggtcagtttcagggacttcctgaaactattttgagtgttttactttcctatgtaagg 783
Query: 69 agcttctctaccagatggagggtttcaatcttggaggaaactgttccacaacactgggtt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 agcttctctaccagatggagggtttcaatcttggaggaaactgttccacaacactgggtt 723
Query: 129 tcttcctgctaggcaggagccccttagtatctggctttatgagctaaagtggtattaccc 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tcttcctgctaggcaggagccccttagtatctggctttatgagctaaagtggtattaccc 663
Query: 189 atcacccctagggattttctacgtcactgtatctttattgagtcaaggttttagatgcta 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atcacccctagggattttctacgtcactgtatctttattgagtcaaggttttagatgcta 603
Query: 249 agcctgttagctcacagacacttgggtttctggagcagctgctctgccattctgccagta 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agcctgttagctcacagacacttgggtttctggagcagctgctctgccattctgccagta 543
Query: 309 tctttcctgctgggaggtgtgcttggagaagctggacgcattctttgcaagtaaatgcta 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tctttcctgctgggaggtgtgcttggagaagctggacgcattctttgcaagtaaatgcta 483
Query: 369 cattgggcaaaaaggaaagagctacatttgaattcttcctgtactgttaactggtggtgt 428
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cattgggtaaaaaggaaagagctacatttgaattcttcctgtactgttaactggtggtgt 423
Query: 429 gatcccaggcaaggaagttggcctttctggtcctccattcctgcattcaataattgtggt 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gatcccaggcaaggaagttggcctttctggtcctccattcctgcattcaataattgtggt 363
Query: 489 tgcaatggtttctccctcttgagtcacagtgaaggatgaacgag-ggggg-gggagagag 546
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 362 tgcaatggtttctccctcttgagtcacagtgaaggatgaacgagagggggagggagagag 303
Query: 547 agagagagagagagagaga 565
|||||||||||||||||||
Sbjct: 302 agagagagagagagagaga 284
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_j21.g1 MSMg01no148_j21.g1 CHROMAT_FILE:
MSMg01no148_j21.g1 PHD_FILE: MSMg01no148_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:34 2005
(664 letters)
>mm_chr5_74270762_74271825
Length = 1064
Score = 1168 bits (604), Expect = 0.0
Identities = 650/668 (97%), Gaps = 6/668 (0%)
Strand = Plus / Plus
Query: 1 agcttctctgcagaagcaacgcgtgctcttcactgctaagccatctctccggtccatcct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 199 agcttctctgcagaagcaacgcgtgctcttcactgctaagccatctctccggtccatctt 258
Query: 61 catct----tttcttattttcttttttaacatttagggttaaagatttattcttcctcac 116
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 catctcttctttctt--tttcttttttaacatttagggttaaagatttattcttcctcac 316
Query: 117 tccgctcttatgtggccattggattaataggaggtcttaagattctttagtggattgact 176
|||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 317 tccgctcttatgtggccattggattaatagaaggtattgcgattctttagtggattgact 376
Query: 177 caactgtcacaagtatcagtatgctgggctgccgtaataaaataccaagcagacctaatg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caactgtcacaagtatcagtatgctgggctgccgtaataaaataccaagcagacctaatg 436
Query: 237 tttaagcaaccaaacttagttttctcacagttttaagtattggaagtccaggatctaggt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tttaagcaaccaaacttagttttctcacagttttaagtattggaagtccaggatctaggt 496
Query: 297 gcgagctgtatgcatcaggtggaggttctcccaatgtatcacaaatggtcagagagcacg 356
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 497 gcgagctgtatgcatcaggtggaggttctcccaatgtatcgcaaatggtcagagagcacg 556
Query: 357 gacgctgagtgttttctaataattggatcagggttgtgcctttgcggttctcacttaagt 416
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gacgctgagtgttttctaatagttggatcagggttgtgcctttgcggttctcacttaagt 616
Query: 417 tttaattacttcattaggaagctaaccttcatacactggaattatggcttcaggccatga 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 617 tttaattacttcattaggaagctaaccttcatacactggaattatggcttcaggtcatga 676
Query: 477 attctggagaaacgcattgagctcatagcagagcgtatcaagcagttagctggcctatgt 536
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 677 attctggagaaacgcattgagctcgcagcagagcatatcaagcagttagctggcctatgt 736
Query: 537 atgtgatcattaagtgtgtactgggtctttttaagccactttgttcatggatttgtgtga 596
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atgtgatcattaagtgtgcactgggtctttttaagccactttgttcatggatttgtgtga 796
Query: 597 aggggctctcagacgtagactatgattaccacagtaagtagaaactatagggaactatgt 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aggggctctcagacgtagactatgattaccacagtaagtagaaactatagggaactatgt 856
Query: 657 aaagacca 664
||||||||
Sbjct: 857 aaagacca 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
