Query= MSMg01no149_a21.b1 MSMg01no149_a21.b1 CHROMAT_FILE:
MSMg01no149_a21.b1 PHD_FILE: MSMg01no149_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:10 2005
(650 letters)
>mm_chr5_87886987_87888036
Length = 1050
Score = 692 bits (358), Expect = 0.0
Identities = 589/690 (85%), Gaps = 53/690 (7%)
Strand = Plus / Plus
Query: 1 ttaaagctagaaacctcgagcctatcccc-acagtgtttcaccctatccagcaaggccac 59
||||||||||||||||| |||| | |||| |||||| ||||||| ||||| ||||| |||
Sbjct: 201 ttaaagctagaaacctcaagccca-cccctacagtggttcaccccatccaacaaggtcac 259
Query: 60 atttactctt--aaaaggccataactcctaatagtgcca-tc-ctgtgttggtcaatcat 115
||||| ||| |||||||||||||||| |||||||||| || ||||| ||||||||||
Sbjct: 260 attta--cttcaaaaaggccataactcccaatagtgccattctctgtg--ggtcaatcat 315
Query: 116 tcaaacacatgagtctatgggggccaaacctattcaaaccaccacagctatagaagtcat 175
||||||||||||||||||||| | |||||||| |||||| |||||| ||||||||||||
Sbjct: 316 tcaaacacatgagtctatgggagacaaacctactcaaactgccacagttatagaagtcat 375
Query: 176 ttcccagctgttagttctttaatccacagataaaataagttacactgatgaatgtggctt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttcccagctgttagttctttaatccacagataaaataagttacactgatgaatgtggctt 435
Query: 236 gtatcatcagggattttatgcattctcacttgacttttgataacactcaggtaagagaga 295
||||||||||||||||| |||| |||||||||||||||||||||||||||| ||| || |
Sbjct: 436 gtatcatcagggattttctgcagtctcacttgacttttgataacactcaggcaagggaaa 495
Query: 296 agcagaagaaaacagcagaagagggagaaaacttcagtgagaaggatattaagtggccga 355
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||
Sbjct: 496 agcagaagaaaacagcagaagagggagaaaacttgagtgagaaggatattgagtggctga 555
Query: 356 ag--------------------------------tggtgttcagccccagtttcct-aca 382
|| ||||||||| ||||||||| | |||
Sbjct: 556 agcatcagagaataaaaggggttcttaggctcagtggtgttcaaacccagtttc-tcaca 614
Query: 383 cagtggcatggctagtccactacttctcaatgtataattaccatactttgatctcagctg 442
||||||||||||||||||||||| ||||||||||| | ||||||||||||| || | |||
Sbjct: 615 cagtggcatggctagtccactacatctcaatgtatgactaccatactttgaccttaactg 674
Query: 443 gcaaaaaaa--tgaagtgaaaagaatagg-aagcaatcatgaagtcaacacaaaaa-gcc 498
| ||||||| | ||||||||||||| || |||||||||||||||||||||||||| | |
Sbjct: 675 gaaaaaaaaattaaagtgaaaagaat-ggcaagcaatcatgaagtcaacacaaaaaagtc 733
Query: 499 ctttttaaaacgtaaatgaagataaaccaaaatacattaatataagtcatttggtgataa 558
||||| ||||||||||| |||||||| |||||||||| ||||| ||||||| |||||||
Sbjct: 734 cttttcaaaacgtaaataaagataaatcaaaatacatcaatatgagtcatt--gtgataa 791
Query: 559 agttggtaacatttaccaaatgcttt-taatgttcacaatattatagtaatttatgtgca 617
||||| |||| |||||||||| ||| ||||| | |||||||||||| ||||||||||||
Sbjct: 792 agttgttaacgtttaccaaata-tttctaatggtaacaatattatagaaatttatgtgca 850
Query: 618 cctttagctacgcacatatacaagaatatt 647
|||||| || | ||| |||||||||||||
Sbjct: 851 tctttagttatgtacacatacaagaatatt 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_a21.g1 MSMg01no149_a21.g1 CHROMAT_FILE:
MSMg01no149_a21.g1 PHD_FILE: MSMg01no149_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:10 2005
(603 letters)
>mm_chr5_87791147_87792149
Length = 1003
Score = 890 bits (460), Expect = 0.0
Identities = 463/464 (99%)
Strand = Plus / Minus
Query: 1 atatccttaagctgggtggcaaacacctttacctactgagccacctcacttcctcattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atatccttaagctgggtggcaaacacctttacctactgagccacctcacttcctcattaa 405
Query: 61 acacttttgaacagaaactattttaagtaggagtacattgtcggaaactagttgtatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 acacttttgaacagaaactattttaagtaggagtacattgtcggaaactagttgtatgta 345
Query: 121 atgccttttcctggatattatatattttgatagtgatacggatacccaatgtgaataaac 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 344 atgccttttcctggatattatatattttaatagtgatacggatacccaatgtgaataaac 285
Query: 181 taatagtgaaaaagacaagtgtattatttttatattattattattttttagacatcaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 taatagtgaaaaagacaagtgtattatttttatattattattattttttagacatcaaaa 225
Query: 241 taatttataatagttaaatacttcttaaatatacatgaatcttctggagctaaaagtaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 taatttataatagttaaatacttcttaaatatacatgaatcttctggagctaaaagtaat 165
Query: 301 aggcactcaaccagtttttaatatctatttggaacattaagcatgatagaagtagaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aggcactcaaccagtttttaatatctatttggaacattaagcatgatagaagtagaaaaa 105
Query: 361 aatctcttctgaagacctctatgaaagggaactgtgccaagttcctaattagccagaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 aatctcttctgaagacctctatgaaagggaactgtgccaagttcctaattagccagaaac 45
Query: 421 tgttttgtctcctagggataacacttaggataactatggcttca 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 tgttttgtctcctagggataacacttaggataactatggcttca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
