Query= MSMg01no149_i11.b1 MSMg01no149_i11.b1 CHROMAT_FILE:
MSMg01no149_i11.b1 PHD_FILE: MSMg01no149_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:50 2005
(342 letters)
>mm_chr5_132201291_132202032
Length = 742
Score = 609 bits (315), Expect = e-179
Identities = 330/335 (98%)
Strand = Plus / Minus
Query: 3 gacaaaccacataatggaagctcttaagagaagaaccagaaccccctaggcagccgtggg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gacaaaccacataatggaagctcttaagagaagaaccagaaccccctaggcagccgtggg 478
Query: 63 cttcttatgcttttctaagaatgcaggagatgtcttagcctaagcctatagctaggctct 122
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cttcttacgcttttctaagaatgcaggagatgtcttagcctaagcctatagctaggctct 418
Query: 123 gtgatacctaaaggctgggaagggggtagagtgcagggtacgcggctaccaatacccaca 182
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 417 gtgatacctaaaggctgggaagggggtagagtgcagggtacgcagctaccaatacccaca 358
Query: 183 ttgatctaaactcactttccagatgagagcttccggaagcctgttagctagtgtctgtag 242
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 357 ttgatctaagctcactttccagatgagagcttctggaagcctgttagctagtgtctgtag 298
Query: 243 agtcagtctggaaagagtctatcctgtctgagagggaaaggactgtcgcagtgggtgtgg 302
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agtcagtctggacagagtctatcctgtctgagagggaaaggactgtcgcagtgggtgtgg 238
Query: 303 cctgtgcagcacaggattgaaacgttacattctta 337
|||||||||||||||||||||||||||||||||||
Sbjct: 237 cctgtgcagcacaggattgaaacgttacattctta 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_i11.g1 MSMg01no149_i11.g1 CHROMAT_FILE:
MSMg01no149_i11.g1 PHD_FILE: MSMg01no149_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:50 2005
(344 letters)
>mm_chr5_132066156_132066898
Length = 743
Score = 582 bits (301), Expect = e-170
Identities = 333/347 (95%), Gaps = 7/347 (2%)
Strand = Plus / Plus
Query: 1 agtgctatattctgtgtgctgggacaagctacaaaacgacacaaattgtgactcgctatt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 201 agtgctatattctgtgtgctgggacaagctacaaaactacacaaattgtgacttgctatt 260
Query: 61 ggcacagacgggctatttattcctgaggctgcaatgaccgacacctgaagcttgagtcat 120
||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ggcacagacgggctact----cctgaggctgcaatgaccgacacctgaagcttgagtcgt 316
Query: 121 caaccctgcatgcattagaaacactggagggatcagaacagtagatttccctgtctacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caaccctgcatgcattagaaacactggagggatcagaacagtagatttccctgtctacta 376
Query: 181 ccaattcccagaaataagacaacctttttggttttttttt---agtggtatactattagt 237
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 377 ccaattctcagaaataagacaacctttttggttttttttttttagtggtatactattagt 436
Query: 238 actttctatatttttgtctgcagtactggggattagaccaagggcctcaagaatgctagg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 actttctatatttttgtctgcagtactggggattagaccaagggcctcaagaatgctagg 496
Query: 298 caagagttctgccgctgagccctgtccccagacctcacttgactttt 344
|||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 497 caagagttctaccactgagccctgtccccagacctcacttgactttt 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 743
Length adjustment: 9
Effective length of query: 335
Effective length of database: 734
Effective search space: 245890
Effective search space used: 245890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
