AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGA
ATTCTTGTTTTTTCCCCATTCCTGTTCCCATAAGAACTTGGGAACCTTCA
AATATTGGAGTATTTGTGAAGGTCAGTGGTGGAGGACCTCTGTCCTCTCT
TGAGTGTTTTGTTTCATTTCTTGTTTTTGGCTTTTGTCGTAGTAAGCTTT
GCTCACAAGGGCTAGGGTGAATAGCTCACACAACAGAGCCATCATTTCTC
AGGCCTCAACAGTGGGTGATTCTTTCTTAGGGGTGCGGGGTGTTGGATGG
GGATCACATTTGTTAAAAAGCACTTCTGTTGTTTCAAATTTGAGAATTAG
ACTGGTGAGATTTATTGAGCTCATGAAACTTCCCTGAGCTGTTTGTTAAC
TAGAATGTGGGACAATGCAATATCTGTCTCCTATGAAAGAAGGTATAATT
ACACAACAGGACAAATTGTTTGAAAAACAAGAGCTTCAAAGAAGCCAGTA
ATTCCTGGAGCCGGAGCAAGCGATCTTTCTTTCTTGGTTCTGAAAGGAGC
AAAAGCTTTAGAAGAATCACTTTTTTCTTCTTCATGAGTTCCGATCATAT
ATTGTAATAGTTTTAACATTTTTTAAAAGTTTACACTTGTATCTCATTCA
TACAATATTCTTGAGATTTGATGTGAGTTATATCAAGACT

NNAACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTGCCCCATTT
TTTAATGGGGTTATTTGAATTTCTGGAGCCCAGCTTCTTGAGCTCTTTGT
ATATATTGGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAAATCCTT
TCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTT
ACAGAAGCTTTGTGATTTTATGAGGACACATGCTCCACTATGTTCATAGC
AGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCTTAACAGAGGAAT
GGATATATAAAATGCGGTACATTTACACAATGGAGTACTACTCAGCTATT
AAAAACAATGAATTTATGAAATTCTTGGGCAAATGGATGTATCTGGAGGA
TATCATCCTGAGTGAGGTAACCCAATCAGAAAAGAAGTCACTTGATATGC
ACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATAC
AATTTGCAAAACATAAGAAAATCAATAAGAAGGAAGACCAATGTATGGAT
ACGTTATTCCTCCTTAGAATAGGGAACAAAATACCTATGGAAGGAGTTAC
AGAGACAAAGTTTGGAGCTAAGATGAAAGGATGGACTATCCAG

Query= MSMg01no149_k24.b1 MSMg01no149_k24.b1 CHROMAT_FILE:
MSMg01no149_k24.b1 PHD_FILE: MSMg01no149_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:02 2005
         (644 letters)



>mm_chr5_89643807_89644851
          Length = 1045

 Score = 1147 bits (593), Expect = 0.0
 Identities = 629/643 (97%), Gaps = 5/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcttgttttttcc---ccattcctgttcccataagaacttgggaaccttcaaata 61
           ||||||||||||||  ||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcttgtttt--ccaacccattcctgttcccataagaacttgggaaccttcaaata 262

                                                                       
Query: 62  ttggagtatttgtgaaggtcagtggtggaggacctctgtcctctcttgagtgttttgttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttggagtatttgtgaaggtcagtggtggaggacctctgtcctctcttgagtgttttgttt 322

                                                                       
Query: 122 catttcttgtttttggcttttgtcgtagtaagctttgctcacaagggctagggtgaatag 181
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 323 catttcttgtttttggcttttgtcgtagcaagctttgctcacaagggctagggtgaatag 382

                                                                       
Query: 182 ctcacacaacagagccatcatttctcaggcctcaacagtgggtgattctttcttaggggt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctcacacaacagagccatcatttctcaggcctcaacagtgggtgattctttcttaggggt 442

                                                                       
Query: 242 gcggggtgttggatggggatcacatttgttaaaaagcacttctgttgtttcaaatttgag 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcggggtgttggatggggatcacatttgttaaaaagcacttctgttgtttcaaatttgag 502

                                                                       
Query: 302 aattagactggtgagatttattgagctcatgaaacttccctgagctgtttgttaactaga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 503 aattagactggtgagatttattgagctcatgaaacttccctgagctgtttgttaattaga 562

                                                                       
Query: 362 atgtgggacaatgcaatatctgtctcctatgaaagaaggtataattacacaacaggacaa 421
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atgtgggacaatgtaatatctgtctcctatgaaagaaggtataattacacaacaggacaa 622

                                                                       
Query: 422 attgtttgaaaaacaagagcttcaaagaagccagtaattcctggagccggagcaagcgat 481
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 623 gttgtttgaaaaacaagagcttcaaagaagccagtaattcctggagctggagcaagcaat 682

                                                                       
Query: 482 ctttctttcttggttctgaaaggagcaaaagctttagaagaatcacttttttcttcttca 541
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 683 ctttctttcttggttctgaaaggagcaaaagctttagaagaatcactttttttttcttca 742

                                                                       
Query: 542 tgagttccgatcatatattgtaatagttttaacattttttaaaagtttacacttgtatct 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgagttccgatcatatattgtaatagttttaacattttttaaaagtttacacttgtatct 802

                                                      
Query: 602 cattcatacaatattcttgagatttgatgtgagttatatcaag 644
            |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 803 aattcgtacaatattcttgagatttgatgtgagttatatcaag 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space:   656190
Effective search space used:   656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)