BAC Information

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BAC

Clone NameMSMg01-149P12
Chromosome5 (Build37)
Map Location 130,995,923 - 130,996,064
singlet/doubletsinglet
Overlap geneCaln1
Upstream geneSfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneWbscr17, Auts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149P12.T7 (MSMg01no149_p12.b1)MSMg01-149P12.TJ (MSMg01no149_p12.g1)
ACCAG352538AG352539
length711714
length of high quality
(start - end)
145 (179 - 323)40 (148 - 187)
definitionCHROMAT_FILE: MSMg01no149_p12.b1 PHD_FILE: MSMg01no149_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:24 2005CHROMAT_FILE: MSMg01no149_p12.g1 PHD_FILE: MSMg01no149_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATGTATCCACAGCCATATTACATTCAGAGGCCATTGTTTCTAAG
CAGACTTCTTCATCCACTTTATTTTAGAGACAGGATGTCTCTCTGAAATA
GAAGTCACCAATTTTGTTAGATTGTTGGTCAATGACCCAAGGGATCTGCC
CAACGAACCATGTTCTCAGCCATTAACTCCTGAATATATTTTAAACTGTT
TCCGTTTCATGATGATTTCCCAGAGGTGATTCATCCTCTCTCTCTCTCTC
TCGGATTTTTTTTTTTTTTTTTTTTGGTATTTGGTTCCTGGTATTTCGAG
ATGGGATGTCTTTGAATTCCCCCGCCTGTCCTGAAGCTCTATCTGTTAAC
CTAACTCACCTTTTGCTCAGAAGTGCGCCTGTCTTTGACTCCCAAGTGGT
GTAATTTCTAGCGTGTCTCTTCGCTGCCCGATATCCGGATGTGAATCTTC
GCCATCATATAGGATGCACGTTATACTTCCAGATGACTAGAATTAGTATA
ACCTTGCATTTTAAATGGCCTTCTTATCATATTATGACCTGATACAGCTG
ATGACTATCAACATGATTGCTGCATGACCCGCTTACTTCTATAGTTTTTC
AGTACACAGCTCACACTATAATTGTCCCGCCTTGCGCAAGTTCTTTCGCT
GCCAAATTCCT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATTGGCCTCTCAGATTAACACGG
ACTTCTAAATAGAAAACTCTCCAATGTGATGCTGGCAGAGACATAAAAAG
GATGCCTTCCGATGTGTTCCTGGGGTATTTGTTCCTGGGCATAAATAGGA
AGTTATCTATCAAGGTAGGAAGAAAGAAATAGAAAAGGGAGGAGGAAGAA
TGGGAAGGTGAAGAAGAGAAGGAAGGAGGAGGAAGAAGGTATACTTAACT
TACCTCCATGAAACTTCTTGATGACTCAGTTAAACAACCTTTTTCGCATT
TATATTTTATATACACAACGGCTGCACTTACTTGACAAATTAAGCATTTC
TGAATTTACTGTCGCCTCTGACAATGTAAATTATTTTTGCTGCTCTCTCT
TTTCTAATATACAACATGGATAGTTCCGACATTTCTAAAGGACAGATGAT
AGTTGGAATGATTTTTCTTATGACTATGTACGTTTAATCCATTGAATTCC
TATATTTCTTACCGTTAGCTATCATACCATTACCAACTCTTGACATACAA
TATACAATTACACTTGATATATTTCTATTTGAGATTCCGACTTTGTTCTC
ACACAATTTATTATACCTCATTCGGCTTCCTGCCTGTCTTTATCCCGTTT
TCCATTCCCGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_p12.b1 MSMg01no149_p12.b1 CHROMAT_FILE:
MSMg01no149_p12.b1 PHD_FILE: MSMg01no149_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:24 2005
         (145 letters)



>mm_chr5_130995723_130996265
          Length = 543

 Score =  242 bits (125), Expect = 8e-69
 Identities = 140/145 (96%), Gaps = 3/145 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaatgacccaagggatctgcccaacgaaccatgttctcagccattaactcctgaatata 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tcaatgacccaagggatctgcccaacgaaccatgttctcagccattaattcctgaatata 260

                                                                       
Query: 61  ttttaaactgtttccgtttcatgatgatttcccagaggtgattcatcctctctctctctc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaaactgtttccgtttcatgatgttttcccagaggtgattcatcctctctctctctc 320

                                    
Query: 121 tctcggatttttttttttttttttt 145
           | | || ||||||||||||||||||
Sbjct: 321 t-t-gg-tttttttttttttttttt 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 543
Length adjustment: 8
Effective length of query: 137
Effective length of database: 535
Effective search space:    73295
Effective search space used:    73295
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)