BAC Information

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BAC

Clone NameMSMg01-150F01
Chromosome5 (Build37)
Map Location 43,305,919 - 43,306,471
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040588, EG636612
Downstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150F01.T7 (MSMg01no150_f01.b1)MSMg01-150F01.TJ (MSMg01no150_f01.g1)
ACCAG352788AG352789
length722721
length of high quality
(start - end)
603 (44 - 646)618 (76 - 693)
definitionCHROMAT_FILE: MSMg01no150_f01.b1 PHD_FILE: MSMg01no150_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:50 2005CHROMAT_FILE: MSMg01no150_f01.g1 PHD_FILE: MSMg01no150_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAAAAGTTGCGAACAGAGTTCTAGAAAAGGCAGCTGGCATAGATCA
GAGATTTAGTAGGAGGCCAGCAGACAAGTATAAGAAAGTGATAAAAGAAC
ATTCCATAGGAAAATTCAACACTTGTGATTTTGGGAATCTGCTGACAGTT
TAGGATTTTGACAAATGGAGAAGGTTTTCATGATTGGACTATGGGTATGA
CCTAAGGGCTGCAGAGATACACAAGAGACAAAATTCACAGGGGTGTTTAT
GTCATGTGAAATTCTGGGAAAGTAGAAATGGACAAAGGTATGTCTGAATT
GCCATCTGGTGTCACAATATACATTTCATCTGGCAAGAACTGTGAAAGCA
CTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGT
ACAAGCCTGCACTCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACA
TCCACGCCAGCATCTGCTGTCACCTGAAATTTTGATCTTAGCCATTCTGA
CTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATG
ATTAAGGATGTTGAACATTTTTTCAGGTGTTTCTCTGCCATTCGGTATTC
CTCAGGTGAGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGT
TATTTGATTTTCTGAAGTCCAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCC
TAAACACATGAAACTCAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_f01.b1 MSMg01no150_f01.b1 CHROMAT_FILE:
MSMg01no150_f01.b1 PHD_FILE: MSMg01no150_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:50 2005
         (603 letters)



>mm_chr5_43305919_43306921
          Length = 1003

 Score = 1023 bits (529), Expect = 0.0
 Identities = 547/553 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaaagttgcgaacagagttctagaaaaggcagctggcatagatcagagattt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gaattcctaaaagttgagaacagagttctagaaaaggcagctggcatagatcagagattt 494

                                                                       
Query: 65  agtaggaggccagcagacaagtataagaaagtgataaaagaacattccataggaaaattc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 493 agtaggaggccagcagacaagtataagaaagtgataaaagaacattccatgggaaaattc 434

                                                                       
Query: 125 aacacttgtgattttgggaatctgctgacagtttaggattttgacaaatggagaaggttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aacacttgtgattttgggaatctgctgacagtttaggattttgacaaatggagaaggttt 374

                                                                       
Query: 185 tcatgattggactatgggtatgacctaagggctgcagagatacacaagagacaaaattca 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcatgattggactatgggtatggcctaagggctgcagagatacacaagagacaaaattca 314

                                                                       
Query: 245 caggggtgtttatgtcatgtgaaattctgggaaagtagaaatggacaaaggtatgtctga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caggggtgtttatgtcatgtgaaattctgggaaagtagaaatggacaaaggtatgtctga 254

                                                                       
Query: 305 attgccatctggtgtcacaatatacatttcatctggcaagaactgtgaaagcactatgtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 attgccatctggtgtcacaatatacatttcatctggcaagaactgtgaaagcactatgtc 194

                                                                       
Query: 365 caattttctgaggaaccgccagactgatttccagagtggttgtacaagcctgcactccca 424
           |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 193 caatattctgaggaaccgccagactgatttccagagtggttgtacaaacctgcactccca 134

                                                                       
Query: 425 ccaacaatggaggagtgttcctctttctccacatccacgccagcatctgctgtcacctga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ccaacaatggaggagtgttcctctttctccacatccacgccagcatctgctgtcacctga 74

                                                                       
Query: 485 aattttgatcttagccattctgactggtgtgaggtggaatctcagggttgttttgatttg 544
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  atttttgatcttagccattctgactggtgtgaggtggaatctcagggttgttttgatttg 14

                        
Query: 545 catttccctgatg 557
           |||||||||||||
Sbjct: 13  catttccctgatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)