BAC Information

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BAC

Clone NameMSMg01-150L18
Chromosome5 (Build37)
Map Location 57,117,550 - 57,117,883
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150L18.T7 (MSMg01no150_l18.b1)MSMg01-150L18.TJ (MSMg01no150_l18.g1)
ACCAG353091AG353092
length725780
length of high quality
(start - end)
334 (78 - 411)54 (72 - 125)
definitionCHROMAT_FILE: MSMg01no150_l18.b1 PHD_FILE: MSMg01no150_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:22 2005CHROMAT_FILE: MSMg01no150_l18.g1 PHD_FILE: MSMg01no150_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCGGAATT
CTCTGGATTCCCATGAAGAATCAGAGGGATTAAAATTCAGTCACATGAAA
GTAAAAACCTTTGGGCTTACTATGACATATTTTTACCTCAATAACTATAG
ATCTGTCCACTCATAAACATTTTCTGGAATTCTTTTTTTTCTGTTGGAAA
GAATTCCTGCATATCTACAGAAGGAAAATATCTTACTTTAAGATGCTATT
CATTAGAAATTGTGTTCCAATAAAGCTCAATTTATATCCAGTTAATTATT
TTTAAGCATAACTAGTCCATCTTCTTGGGCAACAGGAATCCACGTAGTGG
CAATTCTTTTTGATTAGTCTATGAGTAGCACCTATATTATTGCTTTCTCT
CTTTTTATACTATCCCACCAAGGAACACCATTTTTATATTACAACTACAG
CTGGCAAATTAAATCTGAACTGAATCATANTTCTGTTAAATAGCATACTT
ACTATTGGTCAGAAAATCACATTATGTTGATGTGATTTTCATTCTTGACT
AATTATTACCACATAGTTACCAGTTGACACAATTATGCTATTAAATGATA
TTGCGATTTATGCCACACAACCACCACAAATCGACCCACACAAACCACAT
TTCTATCTACCCACAGGTCCTAAAGAGGAACAAATTATTATATTCTTCCA
CTTCCATTATTCACCTCTATCATAN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGTCCAAGAAGCAGGAGTAGGTGTGTT
GGTGAGCAGGAGTAGGGGGAGGGTATGGTTTTCATTCCGCCTGATAGGCG
GCCATAGTCCGAGGAAGAGAATTAAGCGTGCTCTATTGCCCACTTCTGCC
TCGAAAAAGTGGGGGTAACGGGGGTAGGGGACGGGTGCTCGGGGGTTGGC
GCGGCAACGGGGAACAAAGAGCCCGTGGGGAGGGGAGAAGTGCGGGGCCA
GGGGGGGGCTTTTTTTTTTGGGCCGCTTGGTGTCTTGGAACGCGATGGGT
ATAAATTACGTTCTCGGGCACGTGTAAGGGTCAAAGGTTGTCTCGGTGGG
GGGTGGGGCCCCCCTTTCCGCAGGTTGGCAAGGTCGGGGCGGGCCTGTTC
ACTCTCTGTGGCGCGTTAACCAAAAACAAAAATGGGGTGCGGGGGTAATT
TGGTACCATGGCTGAGGGTCGGGGACCTGCGGGTGACGAATGGTGTGTGT
ATGGGGGGATGGGGGGCCGACGTGTGGTATTGGGAACAGATACGGCGGGG
GGGGGTGGGGGGGAAAAAAAACAACAAGGGAAACTTGGGGGGGATGGGGG
GGGGTTAGGTGGGCGCCCTGGGGCGTTTGTGGGCGCACGGGGGGTCATAT
GGGTGTATCGGGGGAACAATTGGTAAATTTTTCAAAGGGGGTCTCACATA
TATTGTCCTTGCATTGGGTTCTCTAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_l18.b1 MSMg01no150_l18.b1 CHROMAT_FILE:
MSMg01no150_l18.b1 PHD_FILE: MSMg01no150_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:22 2005
         (334 letters)



>mm_chr5_57117350_57118083
          Length = 734

 Score =  615 bits (318), Expect = e-180
 Identities = 330/334 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattaaaattcagtcacatgaaagtaaaaacctttgggcttactatgacatatttttacc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 gattaaaattcagtcacatgaaagtaaaaacctttgggcttactatgacacatttttacc 260

                                                                       
Query: 61  tcaataactatagatctgtccactcataaacattttctggaattcttttttttctgttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaataactatagatctgtccactcataaacattttctggaattcttttttttctgttgg 320

                                                                       
Query: 121 aaagaattcctgcatatctacagaaggaaaatatcttactttaagatgctattcattaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaattcctgcatatctacagaaggaaaatatcttactttaagatgctattcattaga 380

                                                                       
Query: 181 aattgtgttccaataaagctcaatttatatccagttaattatttttaagcataactagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| 
Sbjct: 381 aattgtgttccaataaagctcaatttatatccagttaattatttttaggcatatctagtt 440

                                                                       
Query: 241 catcttcttgggcaacaggaatccacgtagtggcaattctttttgattagtctatgagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcttcttgggcaacaggaatccacgtagtggcaattctttttgattagtctatgagta 500

                                             
Query: 301 gcacctatattattgctttctctctttttatact 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacctatattattgctttctctctttttatact 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)