BAC Information

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BAC

Clone NameMSMg01-150P20
Chromosome5 (Build37)
Map Location 63,655,715 - 63,656,081
singlet/doubletsinglet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150P20.T7 (MSMg01no150_p20.b1)MSMg01-150P20.TJ (MSMg01no150_p20.g1)
ACCAG353278AG353279
length707711
length of high quality
(start - end)
492 (50 - 541)344 (80 - 423)
definitionCHROMAT_FILE: MSMg01no150_p20.b1 PHD_FILE: MSMg01no150_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:41 2005CHROMAT_FILE: MSMg01no150_p20.g1 PHD_FILE: MSMg01no150_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAGCATTACCCTAGTTGCCACAATGTTTCAAAGACTGAAC
ATCTAGAGAAGAAAGGTTCATTCAGAAAAAGAAAATGAAACAGTGGTAAT
CATGTAAAATTAAAATCTGATATTTATGGAGTCCATACAAATAGCTGTCC
AATGGCAGACACCGTTGTGAACAGCATATGTGTTACATTTGGTTGTTGCA
TCATGACCAAAAGTGATTTGTGAAAGAAAGACTTTCTATTGGCCCGTGGT
TCCAGAAGAAAGTCCATAATGGCAGGGTAGTTCAAGGAGGAAGTTGGAAG
ATTACCTCTGCAGCTAGCATTGGATGTCAGAGAGAGCAAACTACATGTGA
GGTGAGATCATGACATCTTTTTCTCCCCCTTTCCATTTTTTATTAGATAT
TTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACC
CATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGAC
TCTTGTGAGACTATGACGGGGACTAGCGAACACAGAAGTGGATGCTCACA
GTCAGCTAATGGATGGATCATAGAACTCCCAATGTAGGAAATAGAGAAAG
TAACCAAGGAGCTAAAGAGATATGCTGGCCTATAAGTGAAACTACATTAT
GAACTAG
AACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCATTCTG
GAAATCAGTCTGGCGGTTCCTCAGAATATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGA
TAAGAAGGACACATGCTCCTCTACCCCCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGGTACAG
AAAATGTGGTACATCTACACAATGGAGTACTAGTCAGCTATTAAAAAGAG
TGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCGTCC
TGAGATGAGATAACACATTCACGGAGAAACTCACAAAATATGTACACGCT
GAAACGGGGATATTATTCCCGGACCTAAGATACCCGGGAGGTAAAAAAAG
AGTTGAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_p20.b1 MSMg01no150_p20.b1 CHROMAT_FILE:
MSMg01no150_p20.b1 PHD_FILE: MSMg01no150_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:41 2005
         (492 letters)



>mm_chr5_63655683_63656574
          Length = 892

 Score =  656 bits (339), Expect = 0.0
 Identities = 360/367 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagagcattaccctagttgccacaatgtttcaaagactgaacatctagagaaga 63
           |||||||||||||  |  |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggaattcagagcaagaaactagatgccacaatgtttcaaagactgaacatctagagaaga 340

                                                                       
Query: 64  aaggttcattcagaaaaagaaaatgaaacagtggtaatcatgtaaaattaaaatctgata 123
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaggtttattcagaaaaagaaaatgaaacagtggtaatcatgtaaaattaaaatctgata 280

                                                                       
Query: 124 tttatggagtccatacaaatagctgtccaatggcagacaccgttgtgaacagcatatgtg 183
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 279 tttatggagtccatacaaatagctgtccaatggcagacaccgttgtgaactgcatatgtg 220

                                                                       
Query: 184 ttacatttggttgttgcatcatgaccaaaagtgatttgtgaaagaaagactttctattgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttacatttggttgttgcatcatgaccaaaagtgatttgtgaaagaaagactttctattgg 160

                                                                       
Query: 244 cccgtggttccagaagaaagtccataatggcagggtagttcaaggaggaagttggaagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 cccgtggttccagaagaaagtccataatggcagggtagttcaaggaggaagttggaagat 100

                                                                       
Query: 304 tacctctgcagctagcattggatgtcagagagagcaaactacatgtgaggtgagatcatg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  tacctctgcagctagcattggatgtcagagagagcaaactacatgtgaggtgagatcatg 40

                  
Query: 364 acatctt 370
           |||||||
Sbjct: 39  acatctt 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)