BAC Information

Click to search

BAC

Clone NameMSMg01-151B23
Chromosome5 (Build37)
Map Location 54,822,862 - 54,823,223
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151B23.T7 (MSMg01no151_b23.b1)MSMg01-151B23.TJ (MSMg01no151_b23.g1)
ACCAG353375AG353376
length722729
length of high quality
(start - end)		363 (45 - 407)656 (74 - 729)
definitionCHROMAT_FILE: MSMg01no151_b23.b1 PHD_FILE: MSMg01no151_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:51 2005CHROMAT_FILE: MSMg01no151_b23.g1 PHD_FILE: MSMg01no151_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCTCTTTAAGTACATATTTTGATGATACGGGAACTCTATGTACGTG
TACATGTATGTGTATGTGTATGTGTATGTATATGTAATATGCATGTGTAC
TCATTATGTCTTCACTTGTAATAGAACTAAGGCTTTACCATTGATGTTCT
TTGATCACTGCCCACATGATAGATTTTTCTCCCCTGCCTATCATTTTAGA
CATTCATTCTTCTGTGTATAGTCACATTCCTCAGTGGACACTTACTATAG
CTTTTATATGCGTACCATGTTAATTCCAGTTTGCTTGTGAGGAATGTGTG
AGGAAGAGGTACAGGATTTGACTTTGGTCAATGGGAAGTGGGAGGAAAGA
TGCTGAGACTCTTCCCCCCCCCCTCTGATTGCCAAACTAGAGCTGCAGAC
ACTGGCTATAAACAATATGTTTGCTCAGGTTCATGGAGAGTCATGTGATT
ACAAGCCTCATTAATAGTAATAAAGAACATGCATTCTTCTAAAATAGATG
AACTATATGTACATACATAAAGTAGGTAGATATCCACAGGTTACGGTCAT
TTCTCTTCTTTCTCCAGTATTATCCTTAGGATGCGACTACTGCCTTGTTT
TCACTGTGTTACCATTTATAGCTTTCAGATTTTCTTTGAGCTTTCCTCTC
TGTCTTAGTATACCTATTCACG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGATCA
CTCCTCCACTGTTGGAGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGCAGTTCCTCAAAAAACTGGATATAGTACTACAGGAGGATCCTG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACAGGTAAAAAG
GACACATGCTCCACTATGCCCACAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTACACAATGGAGTACTACTCAGCTATTTAAAAGAATGAATTT
ATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGA
GGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAGATACTTTGGATACCCGAGATATAAGATACAATTTGCT
AAACGCATGAAACTGAAGAAGAACGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_b23.b1 MSMg01no151_b23.b1 CHROMAT_FILE:
MSMg01no151_b23.b1 PHD_FILE: MSMg01no151_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:51 2005
         (363 letters)



>mm_chr5_54822657_54823423
          Length = 767

 Score =  634 bits (328), Expect = 0.0
 Identities = 352/362 (97%), Gaps = 5/362 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctctttaagtac-atattttgatgatacgggaactctatgtacgtgtacatgtat 65
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctttaagtattatattttgatgatacgggaactctatgtacgtgtacatgtat 265

                                                                       
Query: 66  gtgtatgtgtatgtgtatgtatatgtaatatgcatgtgtactcattatgtcttcacttgt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtgtatgtgtatgtgtatgtatatgtaatatgcatgtgtactcattatgtcttcacttgt 325

                                                                       
Query: 126 aatagaactaa----ggctttaccattgatgttctttgatcactgcccacatgatagatt 181
           |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatagaactaactaaggctttaccattgatgttctttgatcactgcccacatgatagatt 385

                                                                       
Query: 182 tttctcccctgcctatcattttagacattcattcttctgtgtatagtcacattcctcagt 241
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 386 tttctcccctgcctatcattttagacattcattcttccatgtatagtcacattcctcagt 445

                                                                       
Query: 242 ggacacttactatagcttttatatgcgtaccatgttaattccagtttgcttgtgaggaat 301
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 446 ggacacttactatagcttttatatgcgtaccatgggaattccagtttgcttgtgaggaat 505

                                                                       
Query: 302 gtgtgaggaagaggtacaggatttgactttggtcaatgggaagtgggaggaaagatgctg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtgtgaggaagaggtacaggatttgactttggtcaatgggaagtgggaggaaagatgctg 565

             
Query: 362 ag 363
           ||
Sbjct: 566 ag 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 767
Length adjustment: 9
Effective length of query: 354
Effective length of database: 758
Effective search space:   268332
Effective search space used:   268332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |