Query= MSMg01no151_n15.b1 MSMg01no151_n15.b1 CHROMAT_FILE:
MSMg01no151_n15.b1 PHD_FILE: MSMg01no151_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:46 2005
(395 letters)
>mm_chr5_91867427_91868217
Length = 791
Score = 333 bits (172), Expect = 1e-95
Identities = 371/530 (70%), Gaps = 143/530 (26%)
Strand = Plus / Plus
Query: 4 agagtgggaggcagaagggtgaggggttcaaagccattcttagctatatcaaaagtagct 63
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 67 agagtggaaggcagaagggtgaaggattcaaagccattcttagctatatcaaaagtagct 126
Query: 64 gggctaatgagcctacatctcaaaaattaaaagaaaagtttcaattaaaaccacaaagca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gggctaatgagcctacatctcaaaaattaaaagaaaagtttcaattaaaaccacaaagca 186
Query: 124 ttgccattgctctccttgtttctcttctaatttatatttaattgaaacaagaaagaaaaa 183
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ttgctattgctctccttctttctcttctaatttatatttaattgaaacaagaaagaaaaa 246
Query: 184 ttctg------------------------------------------------------- 188
|||||
Sbjct: 247 ttctgggggtgggtgggtaagggggacttttggtatagcattggaaatgtaaatgagcta 306
Query: 188 ------------------------------------------------------------ 188
Sbjct: 307 aatacctaataaaaaatggaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaa 366
Query: 189 ----------------------aaatgaggtatctatgactcttttataaataatacttt 226
|||||||||||||||||||||| ||||||| ||||
Sbjct: 367 aaaaaaaaaaagaaaaattctgaaatgaggtatctatgactctt--ataaata---cttt 421
Query: 227 gctaaccttatgaaatggagcacatgtgctccttatagatcttgcttacttaactagaaa 286
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggtagcattatgaaatggagcacatgtgctccttatagatcttgcttacttaactagaaa 481
Query: 287 tataagatgctagtgtacagattcatgaaacaaacgtctgtaaagataagaaaaa-gtat 345
||||||||| |||||||||||| ||||||| |||| |||| |||||||||||||| ||||
Sbjct: 482 tataagatgttagtgtacagatacatgaaataaacatctgcaaagataagaaaaaagtat 541
Query: 346 ttttaaaacgcccccaaatttcgtgagcagctacctctgaaaagaagata 395
|||||||| ||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 542 ttttaaaatgcctccaaatttcgtgagcagctacctctgagaagaagata 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 791
Length adjustment: 9
Effective length of query: 386
Effective length of database: 782
Effective search space: 301852
Effective search space used: 301852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no151_n15.g1 MSMg01no151_n15.g1 CHROMAT_FILE:
MSMg01no151_n15.g1 PHD_FILE: MSMg01no151_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:47 2005
(564 letters)
>mm_chr5_92024288_92025251
Length = 964
Score = 1013 bits (524), Expect = 0.0
Identities = 551/564 (97%), Gaps = 8/564 (1%)
Strand = Plus / Minus
Query: 1 tggagggataaagggaagcagaacatgcaggcaacggtgttaagggcccaaaccaggaag 60
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 787 tggagggataaagggaag-agaacatgcaggcaacggtgttaagggccca-------aag 736
Query: 61 ggaaaggtggacaggaccacgcccacaggcatgaatgtagatgatccctctatgagagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ggaaaggtggacaggaccacgcccacaggcatgaatgtagatgatccctctatgagagat 676
Query: 121 ggatttcacgaaacccactctgctttagctgacctagagtcgcgaacagagtgccaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggatttcacgaaacccactctgctttagctgacctagagtcgcgaacagagtgccaagga 616
Query: 181 gatacagattccccaccccgctgcaggcctgccctccacccatcgccacctgactcttca 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 615 gatacagattccccaccccgctgcaggcctgccctccacccgtcgccacctgactcttca 556
Query: 241 ctgtacggcaggctccacttgtcctggtttctggccacaggtaggatgggaggctgttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctgtacggcaggctccacttgtcctggtttctggccacaggtaggatgggaggctgttta 496
Query: 301 gcagaggagagtgttgcactcaagggagaggctcttctgtcacgcacgtggtcttttcat 360
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 495 gcagaggagagtgttgcactcaagggagaggctcttctgtcatggaggtggtcttttcat 436
Query: 361 agggcttagtaagttctggtttcagctcttttctgtctcaggcctgacccccagtatgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agggcttagtaagttctggtttcagctcttttctgtctcaggcctgacccccagtatgcc 376
Query: 421 tcctgtaccccagtcagggctctgtagtaggctccttcattccaactggaatgtttcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tcctgtaccccagtcagggctctgtagtaggctccttcattccaactggaatgtttcttt 316
Query: 481 cattcttgctcccctcactgatatgccccagccttttgaaataagattacatgtatagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cattcttgctcccctcactgatatgccccagccttttgaaataagattacatgtatagat 256
Query: 541 ataatatattatatataatatgta 564
||||||||||||| ||||||||||
Sbjct: 255 ataatatattatacataatatgta 232
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
