BAC Information

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BAC

Clone NameMSMg01-151P07
Chromosome5 (Build37)
Map Location 115,695,102 - 115,695,601
singlet/doubletsinglet
Overlap geneRnf10
Upstream geneAcacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5
Downstream geneCoq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151P07.T7 (MSMg01no151_p07.b1)MSMg01-151P07.TJ (MSMg01no151_p07.g1)
ACCAG353978AG353979
length715890
length of high quality
(start - end)
568 (47 - 614)150 (79 - 228)
definitionCHROMAT_FILE: MSMg01no151_p07.b1 PHD_FILE: MSMg01no151_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:54 2005CHROMAT_FILE: MSMg01no151_p07.g1 PHD_FILE: MSMg01no151_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGC
GGAATTCACAGCTCTCACCAACCTGGCACATTGCAGTATTTAAGTGAAAG
ACTTTTAGAGTTAGTCCTAAGCTACATTAAATTCTTAGGTTTGCTTCTGA
CTTCTTAGATCTTGTGGCTTCGTAAAGCCTGCATCATTTTTCTGACCCAT
CTGTTCTGTTTTCTCTTTTCTTATTCCCATGTTTAATGTTTATAATGTCC
TTTCGTAATATTGATTGTAAAAGTCAGACTTACTGAGTACACGGTAGGGA
AATGGCTTAATTAAAATTTTATAGGTTGGGCATGGACCATTGCTTAGGTA
TGCTGGGCCTTGGACATCAGTCATCAGTGAAGAACAGCCCTGCAGACTTG
CCTACAGGCAAGCCAGCCCCACGGAGGCCTTCTCCTGACGGAATTAAGAG
TCCTTCTTCATAGATGACCTTCGTTTGTGTAAAGTTGACATAAGAAACTA
GTAAGCACAGACCCTGAGACTGATGATCTACAGGAACTTCCATGGCAGGA
ACGGGGGCTAGACCATGGCTCTTACAGACTGTAACCATGATGTTTCCCCA
CTGAACTGGGAAGGAAGCTGCTGCGTGAAAGGATGCTGTGGAGCCCTGGG
TACACTATGGGGCAGAGTCCTCGTGCTAGGTTTAGTTTGGCAGGTTTGGC
AATTGTGGATTTCTA
CTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTCACAGAATCTTACCATT
CCGTTCATGCCAACCCCACGGGAGTGCACGAACATCAGCTGCAAGGGCTG
TTGCTGGTGTTGTTGTTGTTTGCCTTTGCTTCTACTGATCTGGGGACTTT
GGGGGGGGGGGTTGACTGTTTATTTTAAAGATTTATTTATTCATTATATG
TATTTACATTGCTCCCTGTTATCGTCCACTTTCCACTACGTTATTATATT
TTCTTTACCCTACGAGTGCCTTTTTTTTTTTAGTTCCTTCTTATCATGTT
CATTTTTCTTACCATCCATTATTATTATTTCCTCCCCCTCAAAGGCCGTC
GTATCCTATTATTCCCCTACCTCCTCTTATATTTTATTTTTTCCCCCCCC
CCGCGCGGGTATTATCCTATTATGCGCTATTAATTCTCCGACTCATTCTT
TTGATTACAGACACTCATTATATTCCTTTCCCACCCCTTTACCCAGGAAT
CACCTTATTTTTTCTTTTCCCCGTCTTTTTTATTCCCCTTTTTTTCCTTA
CCATGTATCACTTCTCCTTGCCCTTCCTTCTTCGCTTTGTTATCTGTTCT
CACCTCTCCTTTCATTATATTTTTACCCTATTCTACTCTCATTTTCTTCT
CTCTCTTACTATACCCCCCACTCCGCTTTTTGTCCTTTCTCATTTCTACA
TCTTACCAAAAACCGTCTGTATATTTAGAATCTTATTCTGCCGCTCTCTC
CGATGTTAATCGTTACCGATGTTTATTCTTTTCTTTTCTATCTCATATTC
CTCCTCACTTCTTCGTGCATGTCTTGCTTATTTATTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_p07.b1 MSMg01no151_p07.b1 CHROMAT_FILE:
MSMg01no151_p07.b1 PHD_FILE: MSMg01no151_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:54 2005
         (568 letters)



>mm_chr5_115695102_115696064
          Length = 963

 Score =  878 bits (454), Expect = 0.0
 Identities = 491/506 (97%), Gaps = 7/506 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcacagctctcaccaacctggcacattgcagtatttaagtgaaagacttttagagt 65
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaattcacagctctaaccaacctggcacattgcagtatttaagtgaaagacttttagagt 441

                                                                       
Query: 66  tagtcctaagctacattaaattcttaggtttgcttctgacttcttagatcttgtggcttc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagtcctaagctacattaaattcttaggtttgcttctgacttcttagatcttgtggcttc 381

                                                                       
Query: 126 gtaaagcctgcatcatttttctgacccatctgttctgttttctcttttcttattcccatg 185
           ||||||||||||||||||||||||||||||||||||||||||     |||||||||||||
Sbjct: 380 gtaaagcctgcatcatttttctgacccatctgttctgttttc-----tcttattcccatg 326

                                                                       
Query: 186 tttaatgtttataatgtcctttcgtaatattgattgtaaaagtcagacttactgagtaca 245
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttaatgtttataatgtcctttcataatattgattgtaaaagtcagacttactgagtaca 266

                                                                       
Query: 246 cggtagggaaatggcttaattaaaattttataggttgggcatggaccattgcttaggtat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cggtagggaaatggcttaattaaaattttataggttgggcatggaccattgcttaggtat 206

                                                                       
Query: 306 gctgggccttggacatcagtcatcagtgaagaacagccctgcagacttgcctacaggcaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 205 gctgggccttggacatcagtcatcagtgaagaacagccctgcagacttgcctacaggcag 146

                                                                       
Query: 366 gccagccccacggaggccttctcctgacggaattaagagtccttcttcatagatgacctt 425
           ||||| || |||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 145 gccagtcctacggagaccttctcccgacggaattaagagtccttcttcatagatgacctt 86

                                                                       
Query: 426 cgtttgtgtaaagttgacataagaaactagtaagcacagaccctgagactgatgatctac 485
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 85  cgtttgtgtaaagttgacataagaaactagtcagcacagaccctgagactgatgatctac 26

                                     
Query: 486 aggaacttcca-tggcaggaacgggg 510
           ||||||||| | ||||||||||||||
Sbjct: 25  aggaacttc-agtggcaggaacgggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 963
Length adjustment: 10
Effective length of query: 558
Effective length of database: 953
Effective search space:   531774
Effective search space used:   531774
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)