BAC Information

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BAC

Clone NameMSMg01-152F17
Chromosome5 (Build37)
Map Location 45,024,620 - 45,168,971
singlet/doubletdoublet
Overlap geneLdb2, LOC100041481
Upstream gene5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152F17.T7 (MSMg01no152_f17.b1)MSMg01-152F17.TJ (MSMg01no152_f17.g1)
ACCAG354261AG354262
length738734
length of high quality
(start - end)		595 (44 - 638)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no152_f17.b1 PHD_FILE: MSMg01no152_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:26 2005CHROMAT_FILE: MSMg01no152_f17.g1 PHD_FILE: MSMg01no152_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:26 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(45,168,465 - 45,168,971)(45,024,620 - 45,024,866)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGA
ATTCCATTATCTGGCCCACATAGATCAACGTGCTGAGAGCCAGAAGCTAC
GTACTGATCACAGCCCCTTAACGGGATTGTATTTAATATCTTCTTGATGC
TAAGTCTTTCCCACATCACCTTCAGCTGTTTCTCTAGGTATGACCCACTT
CCCTTCCCAGTGGCTATTTCTTGGCAACTTTAAATGCACTTGCTTTATGG
TCCATCCTACTATTTGCTTATTTTTCCCTGTCTGGTAACCATTATGGTCT
GTCCCTCCAGCTTGTATTTTGATGTTTCTGCCACCTTTTCTTACCACACA
AGACTATTTTATACTCACAAAGAACCATTTTAGACTTAGCTGGAAACATT
CTTATCAAATGCCATTCCTATGTATCCGTATACATGGCTAAAAACAAAAC
AAGTTGCCTAAGCATTGCAAAAATTTATCATATACAGAATTATTTTTGAC
TCACTTATCCAGAATTTTCCAAGTAAAATAACCTGTGCACCATCACAACC
ACTAGTGAAACACTATTTTTCAAGTAATCTATGGATGACTCTAGGGTATG
AACAGGTCCTGCATTATCTAGTCCTTGGTTAATATGCAGGTCCATCGCTG
GCAATGTAATGTATCTTGCTGGATACACATCCTGCCCGATTCCTTAACCT
AAATATTTGATTGTGAGAACCCTAAGAGTGATCCATCN

CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCCGGATAACTTCTTTGAACAAGTGATGGTTTATTT
TATAATGAGCAACAGATGTCTGGCCGAGGAATAAAGTGGAGAGGAAAGTA
ATAATTCAGTAAGATAATTTAAAAAAATTAAAAATCGAAGTGCCACTGTA
AATCTCCTTAGAATTCTTGCAGCAGACAGAGCCAAAGCAATGCCTCAAAT
AGGAATTAGTCTGTCATTGTTCCAGTTACAGAAGGGGACCCTTACTGAGC
ACACTTCTGTCTTAAGATCTCNCATGCNTTCTGTAAACTAACTACAAATA
CTCCAAGGTTAGTTATAGCTGCCCCGCTTTTGAACAAAACATTTGTAACA
TCAATTTCTTTGTTTTCTGCGACATAAGCGTACTTGATTTGAGAGACAGA
CGCTATAATCCATCAACTAGGGGCTAATACTATAATGACTCAGCAGCTGA
CAAGGTTTGTTACACAAGTCTAACGAGCTGAACCTGGACACCATAAAACC
TTGGAAAAATCTGTATATGGCATTATACATGTTCATGTCACTCTGTTTGC
TTCTATGTACATGCTTTTATTCTTAGACCATGCATTTTTTTTACCTAGAC
CCTCACGGTTTTATTTTTTCTGTGTGCACCCCCTATCTCTGCTAATATTT
CCTTCTGGCACCTTTTTCCTACCTTTCTGTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_f17.b1 MSMg01no152_f17.b1 CHROMAT_FILE:
MSMg01no152_f17.b1 PHD_FILE: MSMg01no152_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:26 2005
         (595 letters)



>mm_chr5_45168465_45169459
          Length = 995

 Score =  949 bits (491), Expect = 0.0
 Identities = 503/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 24  cacatagatcaacgtgctgagagccagaagctacgtactgatcacagccccttaacggga 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cacatagatcaacgtgctgagagccagaagctacgtactgatcacagccccttaacggga 448

                                                                       
Query: 84  ttgtatttaatatcttcttgatgctaagtctttcccacatcaccttcagctgtttctcta 143
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttatatttaatatcttcttgatgctaagtctttcccacatcaccttcagctgtttctcta 388

                                                                       
Query: 144 ggtatgacccacttcccttcccagtggctatttcttggcaactttaaatgcacttgcttt 203
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggtgtgacccacttcccttcccagtggctatttcttggcaactttaaatgcacttgcttt 328

                                                                       
Query: 204 atggtccatcctactatttgcttatttttccctgtctggtaaccattatggtctgtccct 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atggtccatcctactatttgcttatttttccctgtctggtaaccattatggtctgtccct 268

                                                                       
Query: 264 ccagcttgtattttgatgtttctgccaccttttcttaccacacaagactattttatactc 323
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 267 ccagcttgtattttgatgtttctgccaccttttcttaccacacaggactattttatactc 208

                                                                       
Query: 324 acaaagaaccattttagacttagctggaaacattcttatcaaatgccattcctatgtatc 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 acaaagaaccattttagacttagctggaaacattcttatcaaatgccattcctatgtatc 148

                                                                       
Query: 384 cgtatacatggctaaaaacaaaacaagttgcctaagcattgcaaaaatttatcatataca 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 147 cgtatacatggctaaaaacaaaacaagttgcctaagcattgcaaaaatttatcatatgca 88

                                                                       
Query: 444 gaattatttttgactcacttatccagaattttccaagtaaaataacctgtgcaccatcac 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  gaattatttttgactcacttatccagaattttccaagtaaaataacctgtgcaccatcac 28

                                      
Query: 504 aaccactagtgaaacactatttttcaa 530
           |||||||||||||||||||||||||||
Sbjct: 27  aaccactagtgaaacactatttttcaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no152_f17.g1 MSMg01no152_f17.g1 CHROMAT_FILE:
MSMg01no152_f17.g1 PHD_FILE: MSMg01no152_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:26 2005
         (249 letters)



>mm_chr5_45024420_45025068
          Length = 649

 Score =  431 bits (223), Expect = e-125
 Identities = 241/247 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctttgaacaagtgatggtttattttataatgagcaacagatgtctggccgaggaataa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 ttctttgaacaagtgatggtttattttataatgagcaacagatgtctgggtgaggaataa 260

                                                                       
Query: 61  agtggagaggaaagtaataattcagtaagataatttaaaaaaattaaaaatcgaagtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtggagaggaaagtaataattcagtaagataatttaaaaaaattaaaaatcgaagtgcc 320

                                                                       
Query: 121 actgtaaatctccttagaattcttgcagcagacagagccaaagcaatgcctcaaatagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtaaatctccttagaattcttgcagcagacagagccaaagcaatgcctcaaatagga 380

                                                                       
Query: 181 attagtctgtcattgttccagttacagaaggggacccttactgagcacacttctgtctta 240
           |  || |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 aagagcctgtcattgttccagttacagaaggggacccttattgagcacacttctgtctta 440

                  
Query: 241 agatctc 247
           |||||||
Sbjct: 441 agatctc 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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