BAC Information

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BAC

Clone NameMSMg01-152I05
Chromosome5 (Build37)
Map Location 54,501,459 - 54,501,807
singlet/doubletsinglet
Overlap geneStim2
Upstream gene2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152I05.T7 (MSMg01no152_i05.b1)MSMg01-152I05.TJ (MSMg01no152_i05.g1)
ACCAG354363AG354364
length767715
length of high quality
(start - end)
158 (73 - 230)349 (82 - 430)
definitionCHROMAT_FILE: MSMg01no152_i05.b1 PHD_FILE: MSMg01no152_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:37 2005CHROMAT_FILE: MSMg01no152_i05.g1 PHD_FILE: MSMg01no152_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCAGAGGATCCGCGGA
ATTCCAGTAGATTCCTCCACCATCATCCTGATTCTCAGAAAGAATTTCTT
CGCAAGACCAAGGGCCTCCCCTATGCCCCAGTACAAGGGAATGCCAGGGC
CTGGAAGCAGGAGTGGGTGGGTTGGGGAACAGGGAGGGGCGGGAGGAAGG
ACAGGATAGGGGATTGTCGGAGAGGAAACTAGGAAAGGGGATAGTATTTG
AAATGTACCCATCTTCTGCGAGCTATGACCCCCTGCCCCCCCTATGAATC
ATCCTACCCCCACCCCCCCCACTGGTTTTATCTGTCCCGTCCCCACCCCA
ACCAACCCTGTTCTTATTGCTTTCTCCCCCACATCCCCACCTTCTCTACA
GTCCACTCACTCCCCTATCCCCCTAACACCCGTCCCCATCCCCCACCTTC
CCCCACCTACCCCTACCTACCTCCACTCATACCCATCCGCCTACACCCTC
ACCCCCTCCTCCCACCCTTCCAATCCCTCCCATCCCTCACCCTGCCCCCC
TCCCCATCTCCCCCCCCTACCCCACCCCGCGCCTCCACACTCTTTCACCT
TCTCCCGCCCCCCCCGTCCCTCCGATTCCCCCCCCGCTCTTCGCCCCTCC
CCCCCCGCTCCCTTTACGCCTCTTGCCCCTTTCACCCCCGCTGCCCAACT
GCAATACCCTCCCCTTCCCCCCGACCCCATCCTCCACCTCTCCCCACCTC
TTCTCCCTCTTCCCCCN
CGATGAAGTGAGAGGCCTGGNGGACGCCCGGCCTGCACAAACTAGGTGAA
CTATAGAAGGACTCGCGAAACTCTGGAAAATGCATAGTCGACTCACTAAC
ACCTCATCGCAGTAGGATTTGTAATGTCTTTCTGTTGGTTTTAATAGAAG
ACTCTGGTCTTGGGCGGCTACAGAAATCTGAGAAACAGTTCTCTGGAACA
AAGCTTTAAGTGTCTCTGACTTAGGACAGCATGCTTTCTCTCTCATCTGT
TTTCCGATTTTGAAAACATGTCTGTATCTTGGCTGATAATTTTCTACTGG
TTTTATGATTAATAGAGTCAAAACCAGGATCAACTTCGCTGGTTATAGAA
GTAGTCATTTTCCTAAACCTAGCTTTATTCTTTACCTTTTGGGTCTAGGC
AGAAAAAATTAAAAAGAAGAGAAGCACAGTCTTTGGGACCCTGCACGTTG
CACACAGCTCCTCCCTGGACGAAGTAGACCACAAGATTCTGGAAGCCCAG
TGAGAATGCTGTGCTGTCTGTCTGTCCGTCTGTCTCTGCTCAGCTGTATG
CATGTACTATGTAGATATGTGCATTTAATCCGCGAAGCATGTGTAACGAC
ATAATTGATACTGATTCGGAAATTGGATAATTTCTCCCTCTCATCAGTCA
GGCTCTGCGGTCTCGTCCCGCTGCTTTAACTTTACCGCCCTACCAACCGC
TCTCATCCGACAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_i05.g1 MSMg01no152_i05.g1 CHROMAT_FILE:
MSMg01no152_i05.g1 PHD_FILE: MSMg01no152_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:37 2005
         (349 letters)



>mm_chr5_54501259_54502007
          Length = 749

 Score =  659 bits (341), Expect = 0.0
 Identities = 347/349 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatagtcgactcactaacacctcatcgcagtaggatttgtaatgtctttctgttggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcatagtcgactcactaacacctcatcgcagtaggatttgtaatgtctttctgttggttt 260

                                                                       
Query: 61  taatagaagactctggtcttgggcggctacagaaatctgagaaacagttctctggaacaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 taatagaagactctggtcttgggcggctacagaaatctgagaaacagttctctggagcaa 320

                                                                       
Query: 121 agctttaagtgtctctgacttaggacagcatgctttctctctcatctgttttccgatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctttaagtgtctctgacttaggacagcatgctttctctctcatctgttttccgatttt 380

                                                                       
Query: 181 gaaaacatgtctgtatcttggctgataattttctactggttttatgattaatagagtcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaacatgtctgtatcttggctgataattttctactggttttatgattaatagagtcaa 440

                                                                       
Query: 241 aaccaggatcaacttcgctggttatagaagtagtcattttcctaaacctagctttattct 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 aaccaggatcaacttcgctggttatagaagtagtcattttcctgaacctagctttattct 500

                                                            
Query: 301 ttaccttttgggtctaggcagaaaaaattaaaaagaagagaagcacagt 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaccttttgggtctaggcagaaaaaattaaaaagaagagaagcacagt 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)