Query= MSMg01no153_a16.b1 MSMg01no153_a16.b1 CHROMAT_FILE:
MSMg01no153_a16.b1 PHD_FILE: MSMg01no153_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:19 2005
(604 letters)
>mm_chr5_82978780_82979784
Length = 1005
Score = 868 bits (449), Expect = 0.0
Identities = 473/481 (98%), Gaps = 2/481 (0%)
Strand = Plus / Minus
Query: 1 ataatatattttaaaaataattacatcgttagtggaggttaaaaccatagtaaacacttt 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 480 ataatatattttaaaaataattacatcaatagtggaggttaaaaccatagtaaacacttt 421
Query: 61 gaaaactactaaaggcaagataaagaaacaagatt-aaaaactagcacataaatagtgaa 119
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 420 gaaaactactaaaggcaaaataaagaaacaagattaaaaaactagcacataaatagtgaa 361
Query: 120 tctgtaaaaataatttaagaaaagctttctggattaaaattgattggatatggtgatttc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tctgtaaaaataatttaagaaaagctttctggattaaaattgattggatatggtgatttc 301
Query: 180 aggatcattgaaagacttggtgaattactatatataaatttgatgaaataattgaaaaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aggatcattgaaagacttggtgaattactatatataaatttgatgaaataattgaaaaga 241
Query: 240 tttttatatagtaaattttgacccatgctgaaatttaaattttgaggaccaaaccagcaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tttttatatagtaaattttgacccatgctgaaatttaaattttgaggaccaaaccagcaa 181
Query: 300 cacttcagtgtgtgttctctttgggaccaggttcatgggtaaagtaattcatataagatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 180 cacttcagtgtgtgttctctttgggaccaggttcatgggtaaagtaattcacataagatg 121
Query: 360 aggtcaataaaatggcccttaatccaagattactgatgtacaaaatgtatatagactaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 120 aggtcaataaaatggcccttaatccaagattactgatgtacaaaatgtatatagaataaa 61
Query: 420 ggaacagagatctatatgcaagaagaatagcaaggaaaacaaatgcataagttatccaaa 479
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 60 ggtacagagatctatatgcaagaagaatagcaagg-aaacaaatgcataagttatccaaa 2
Query: 480 c 480
|
Sbjct: 1 c 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1005
Length adjustment: 10
Effective length of query: 594
Effective length of database: 995
Effective search space: 591030
Effective search space used: 591030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_a16.g1 MSMg01no153_a16.g1 CHROMAT_FILE:
MSMg01no153_a16.g1 PHD_FILE: MSMg01no153_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:19 2005
(639 letters)
>mm_chr5_82831085_82832123
Length = 1039
Score = 1166 bits (603), Expect = 0.0
Identities = 630/639 (98%)
Strand = Plus / Plus
Query: 1 taaatgatggagataatcccagagtagagccaaataatgtttgttctatctggagagagg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 taaatgatggagataatcccagagtagatccaaataatgtttgttctatctggagagagg 260
Query: 61 atggcaatattccattaattatttatcctccttaagtatttttaatttgatcagaaacta 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 atggcaatattccattaattatttagcctccttaagtatttttaatttgatcagaaacta 320
Query: 121 tcaatgcatcaatgtgttttctgtctgcaattaaggccatttcagtacatccttcactga 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tcaatgcatcaatgtgttttctgtctgcaattaaggctatttcagtacatccttcactga 380
Query: 181 ttattgaatatctagttgttttccagttttactgcacaattacacatgtaaacatccaca 240
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 381 ttattgaatatctagttgttttccagttttactgcacaattacgcatggaaacatccaca 440
Query: 241 ggtgttttcatgaaaatctaagtgtaagagttacaacatgtatgttggaacttgagcata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgttttcatgaaaatctaagtgtaagagttacaacatgtatgttggaacttgagcata 500
Query: 301 aaattcctcaagagtcactggctttatttttctgagttttgtcaagtctgagatatgcag 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 aaattcctcaagagtcactggctttatttttctgagtttcgtcaagtctgagatatgcag 560
Query: 361 gaaactatggctattttgatacttcagttcatatttctgtttttaatgactgatagagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaactatggctattttgatacttcagttcatatttctgtttttaatgactgatagagca 620
Query: 421 taggttattgtatttgccaaggaattataattaggaagacaatagattgtatttctaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggttattgtatttgccaaggaattataattaggaagacaatagattgtatttctaggt 680
Query: 481 agagtatgaaaaggatgtcagcactaaagctatctctctttcgtcgggtcctgatgactg 540
||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 681 agagtataaaaaggatgtcagcactaaagctatctctctttcattgggtcctgatgactg 740
Query: 541 tcttagttcttctatctactatagtagttataattattctgtctgtatcaattaaatact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcttagttcttctatctactatagtagttataattattctgtctgtatcaattaaatact 800
Query: 601 agctcttggccctacttctttgaaatctcatcaactcca 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agctcttggccctacttctttgaaatctcatcaactcca 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
