Query= MSMg01no153_i08.b1 MSMg01no153_i08.b1 CHROMAT_FILE:
MSMg01no153_i08.b1 PHD_FILE: MSMg01no153_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:55 2005
(562 letters)
>mm_chr5_38100070_38101031
Length = 962
Score = 1064 bits (550), Expect = 0.0
Identities = 560/564 (99%), Gaps = 2/564 (0%)
Strand = Plus / Plus
Query: 1 cagtttctgcctccaagttccttccttgagtttctgccctgacttccttcagtaatggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cagtttctgcctccaagttccttccttgagtttctgccctgacttccttcagtaatggag 258
Query: 61 tatgacctgggtattgaaagctgaaataacccttctcctccagctggtttttgttttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tatgacctgggtattgaaagctgaaataacccttctcctccagctggtttttgttttgct 318
Query: 121 ttgtttgctttttgttttgtttt--tgtgtgttttatcacagcaatagaaaccataacta 178
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 319 ttgtttgctttttgttttgtttttgtgtgtgttttatcacagcaatagaaaccataacta 378
Query: 179 aaacttgtgatttattacaatattaaaaagttggtttaacacttttaaaaaatcagttga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaacttgtgatttattacaatattaaaaagttggtttaacacttttaaaaaatcagttga 438
Query: 239 tttaatattgcatttggccagagaaaaatccacatactatttccatagacatatggaagc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttaatattgcatttggccagagaaaaatccacatactatttccatagacatatggaagc 498
Query: 299 ctccctgacttaaagcagcaggtctctgtggttcccagctagctggtaaagggtgtggcc 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 499 ctccctgacttaaagcagcaggtctctgtggttcccggctagctggtaaagggtgtggcc 558
Query: 359 tctggtccatgctgttctcacacccttcgagccatgcagaagtaaagttctgccttttgg 418
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 559 tctggtccatgctgttctcacacccttcaagccatgcagaagtaaagttctgccttttgg 618
Query: 419 ataattgtgcttgtcttaagatagacagacaggaagtggcgcctaccagctggtaaatat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ataattgtgcttgtcttaagatagacagacaggaagtggcgcctaccagctggtaaatat 678
Query: 479 tttacctgagataagatacagaacaatgctgaccatttggatcaacgtcattcacgtgtc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tttacctgagataagatacagaacaatgctgaccatttggatcaacgtcattcacgtgtc 738
Query: 539 cctcacaatctcagagcaaacaag 562
||||||||||||||||||||||||
Sbjct: 739 cctcacaatctcagagcaaacaag 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_i08.g1 MSMg01no153_i08.g1 CHROMAT_FILE:
MSMg01no153_i08.g1 PHD_FILE: MSMg01no153_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:55 2005
(627 letters)
>mm_chr5_38206976_38208002
Length = 1027
Score = 1166 bits (603), Expect = 0.0
Identities = 621/627 (99%)
Strand = Plus / Minus
Query: 1 ctttggtgtgtggagagattgagggaaagatccagcaaagcctggcagagagcagaacgg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 762 ctttggtgtgtggagagattgagggaaagatccagcaaagcctggtagagagcagaacgg 703
Query: 61 gtctcaatgggagatgtggaatcacagcattctagcatcctaggtgctgggggcaggcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gtctcaatgggagatgtggaatcacagcattctagcatcctaggtgctgggggcaggcac 643
Query: 121 cagggtgagcaccagaggagcactatgcagaggcacacatgtaactgtttatgtacgagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cagggtgagcaccagaggagcactatgcagaggcacacatgtaactgtttatgtacgagt 583
Query: 181 gctttggccctcatacacatgtgtgtgcacggccagttctaggatatagagctttcatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gctttggccctcatacacatgtgtgtgcacggccagttctaggatatagagctttcatgg 523
Query: 241 gtgaggttgaggaatgctgggaagttcctcccttcaacataaggagccttcatcccccct 300
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
Sbjct: 522 gtgaggttgaggaatgctgggaagttcttcccttcaacataaggagccttcgtccccctt 463
Query: 301 ccccatagcagagcttctgccctgcgtttggcaaagcctcacatgccttcccaagatggg 360
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 462 ccccagagcagagcttctgccctgcatttggcaaagcctcacatgccttcccaagatggg 403
Query: 361 gctcctaagggacctggccctgcttactcttggacagcactcgggcccaggatcaggacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gctcctaagggacctggccctgcttactcttggacagcactcgggcccaggatcaggacc 343
Query: 421 atctgtccagcatgtcaggcaggcccaaagatgtgggtgctgctaggaacagccagaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atctgtccagcatgtcaggcaggcccaaagatgtgggtgctgctaggaacagccagaata 283
Query: 481 ccactagatactgcagtctgtcagtgtctgattgtctgatctgcagttgtctgcctggag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccactagatactgcagtctgtcagtgtctgattgtctgatctgcagttgtctgcctggag 223
Query: 541 atcctcgttttagacttttgaggccatgtgatttgaggcaagttccttaagttttctggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atcctcgttttagacttttgaggccatgtgatttgaggcaagttccttaagttttctggg 163
Query: 601 cctgtctcttctctatatgccaagtgt 627
|||||||||||||||||||||||||||
Sbjct: 162 cctgtctcttctctatatgccaagtgt 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
