AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAACCGC
GGAATTCTTTGCTTATTCCTGCTCCCCGTTTTTAGGTGGGTTATTTCCTT
GATGTTCAATTTCGTTAGTTCTTTATATATCCCAGGTACTAATGCTCTAT
CAAATTTATAATTCATATATATTTTTCGCTTTTGTAGACTTCTGTTTTGC
TCAAATGATGGTGCTCTTTGCCATACAGAAATTTGCAGGTTCATGAGATC
CAATTTATTAATATTATTGAAGACGGGAAAACCAGAAATCACACACACAC
AATTACTTCTCTCACCAGAAAATAAATGTGAGAAATTTTAACATTTTATT
TGCTTTTTTTTTCCTTTCCACATCCCCAAATCCCATTTTCTGTAATAAAT
GACACTTTTAACTTAAAAACTCTTGTCTATGGAATGTATTTAAAATATTA
CTCATTAACTTGGACACATGGAGCCTTCAGACACTGAACCATCAACCAAG
TAACATAGAGGAGCTGGCCCTAGGACTTCCCACACGTATGTAGCAGATGT
GCAGCTGGTCCTCATCTGTGTCCTGAACAACAGAAATAGGGTCTATCCTT
AAAGCAGTTGTATGTTCATGAGATAGGTTCTTCTAGCTGGGCTGTCTTGT
CTATCTTTAGTGCGAAAGGATGTCCTAGCCTCACAGAGACTTGATATGCT
AGGACAAGGGAATA

TGATGCTANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCA
TGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGT
CCTGGATTGNNCGAANTGNNCGTTCTGGGTTCTGATGATGGTGAGTGGTC
CTGGCTTCTCTTANTANGATTCTTACNTTTACCTTTCGCCATCTGGCAAT
CTCTGGAGTTAGTTGTTATAGTTGTCTTTATTAANANATTGTTCCTCTGT
TGATTTTGTTACCCTCTATCANCANTCNTGNNANACAAGCTCTCTTCTCT
GANTTTCANTGNTCAAANCATTCTCTGTAGGCAAGCTCTCCTCTCTCANG
NAAGGTGTACAGTTAATCTGCCGTTTGGACCCCCCTCCTGCCTTAATTTA
AAGCCCCAAAACAGATCTTTCCCCAAAACTTTTTTTCTTTTTTCCTCCAA
ATGGGCCATTTTTCTTGGATTCCAAAATTTTTCCCCCCTCCAAAACTTTT
GGGTTTTTTTCCAAGTNNNNNTTTTTCCCTTTATAGCTTTCATANGGGGG
CGGGGGCTNNNNNNNNNNCCCCTCTTCCCNCTCTCCTCTTCCTGGNAGGC
TGAGGTACGGNNNNNNNNNCNCCNCNCTCNCCCCTTCNTTTCTTTTTCCT
CTTTTTCTTTTTNNTNCTCCGGTGGTGTCAAGAAAGTGGGCCTGTCTTCC
TGTTTN

Query= MSMg01no153_j01.b1 MSMg01no153_j01.b1 CHROMAT_FILE:
MSMg01no153_j01.b1 PHD_FILE: MSMg01no153_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:58 2005
         (656 letters)



>mm_chr5_85859227_85860281
          Length = 1055

 Score = 1075 bits (556), Expect = 0.0
 Identities = 630/656 (96%), Gaps = 8/656 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgctta-ttcctgctccccgtttttaggtgggttatttccttgatgttcaat 63
           |||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 828 gaattctttgcttagtt-ctgctccccatttttaggtgggttatttccttgatgttcaat 770

                                                                       
Query: 64  ttcgttagttctttatatatcccaggtactaatgctctatcaaatttataattcatatat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 769 ttcgttagttctttatatatcccaggtactaatgctctatcaaatttataattcatatac 710

                                                                       
Query: 124 atttttcgcttttgtagacttctgttttgctcaaatgatggtgctctttgccatacagaa 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 709 atttttcgcttttgtagacttctgttttactcaaatgatggtgctctttgccatacagaa 650

                                                                       
Query: 184 atttgcaggttcatgagatccaatttattaatattattgaagacgggaaaaccagaaatc 243
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 649 atttgcaggttcatgagatccaatttattaatattattgaagaagggaaaaccagaaatc 590

                                                                       
Query: 244 acacacacacaattacttctctcaccagaaaataaatgtgagaaattttaacattttatt 303
           |||||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 589 acacacaca--attacttctctcaccagaaaataaatgtgggaaattttaacattctatt 532

                                                                       
Query: 304 tgctttttttttcc--tttccacatccccaaatcccattttctgtaataaatgacacttt 361
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgctttttttttcccctctccacatccccaaatcccattttctgtaataaatgacacttt 472

                                                                       
Query: 362 taacttaaaaactcttgtctatggaatgtatttaaaatattactcattaacttggacaca 421
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 -aacttaaaaactcttgtctatggaatgtatttaaaatattactcattaacttggacaca 413

                                                                       
Query: 422 tggagccttcagacactgaaccatcaaccaagtaacatagaggagctggccctaggactt 481
           ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 412 tggagtcttcagagactgaaccatcaaccaagtaacatacaggagctggccctaggactt 353

                                                                       
Query: 482 cccacacgtatgtagcagatgtgcagctggtcctcatctgtgtcctgaacaacagaaata 541
           |||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||
Sbjct: 352 cccacacgtatgtagcagatgtgcagctggtcttcatctgggtcctgaataacaggaata 293

                                                                       
Query: 542 gggtctatccttaaagcagttgtatgttcatgagataggttcttctagctgggctgtctt 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gggtctatccttaaagcagttgtatgttcatgagataggttcttctagctgggctgtctt 233

                                                                   
Query: 602 gtctatctttagtgcgaaaggatg-tcctagcctcacagagacttgatatgctagg 656
           ||||||| | |||| || |||||| |||||||||||||||||||||||||||||||
Sbjct: 232 gtctatcatcagtgggagaggatgctcctagcctcacagagacttgatatgctagg 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space:   675070
Effective search space used:   675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)