Query= MSMg01no153_k04.b1 MSMg01no153_k04.b1 CHROMAT_FILE:
MSMg01no153_k04.b1 PHD_FILE: MSMg01no153_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:03 2005
(645 letters)
>mm_chr5_76063842_76064886
Length = 1045
Score = 1216 bits (629), Expect = 0.0
Identities = 638/641 (99%)
Strand = Plus / Plus
Query: 5 gaattcatagttatgtcccctgcaaacttagaggtctggaatatttgcttaattctttct 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagttatggaacctgcaaacttagaggtctggaatatttgcttaattctttct 264
Query: 65 cttccgtagcaaatcaatgataactttgatatggtttctcccatacctttctacttttat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttccgtagcaaatcaatgataactttgatatggtttctcccatacctttctacttttat 324
Query: 125 gtgtgcatttcttaaagaaataaattatcagcttacattttaatgaacactggcttatag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgtgcatttcttaaagaaataaattatcagcttacattttaatgaacactggcttatag 384
Query: 185 aaattactccatgtcactgtaaatcactgtaattgttcatattatggtcacaaagagaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaattactccatgtcactgtaaatcactgtaattgttcatattatggtcacaaagagaaa 444
Query: 245 tctaataattccaggtaagactttgctgattggctctggaaagtctgagatctggttttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctaataattccaggtaagactttgctgattggctctggaaagtctgagatctggttttc 504
Query: 305 ttccgtccacttctaccctacatggaagctggcatatatctgggttaaaagctacatcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttccgtccacttctaccctacatggaagctggcatatatctgggttaaaagctacatcag 564
Query: 365 gggatgtaagtaaaatttgactttagtcagtttattaaataaagataatccacatgagaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggatgtaagtaaaatttgactttagtcagtttattaaataaagataatccacatgagaa 624
Query: 425 agcctagcgctgggctgggagaagtgtgtgtgctcattaaaagttaattaaatctgaaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcctagcgctgggctgggagaagtgtgtgtgctcattaaaagttaattaaatctgaaaa 684
Query: 485 tataatcggctttaataagtaaaagtatcctgagaaaaaagtcgggataccagcgtgcct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tataatcggctttaataagtaaaagtatcctgagaaaaaagtcgggataccagcgtgcct 744
Query: 545 gggttgatttttattggatgtatttttaaaagaaaattgctagccttttggggtgtctaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gggttgatttttattggatgtatttttaaaagaaaattgctagccttttggggtgtctaa 804
Query: 605 aggcaactagaagaaaaggagtcattttccaatcacaccca 645
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aggcaactagaagaaaaggagtcattttccaatcacaccca 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_k04.g1 MSMg01no153_k04.g1 CHROMAT_FILE:
MSMg01no153_k04.g1 PHD_FILE: MSMg01no153_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:03 2005
(614 letters)
>mm_chr5_76212360_76213367
Length = 1008
Score = 843 bits (436), Expect = 0.0
Identities = 461/472 (97%), Gaps = 7/472 (1%)
Strand = Plus / Minus
Query: 1 cagtgactgggcaggtgtgtctgtccccaatgtggacgtcacataaagcaacactgatgt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 466 cagtgactgggcaggtgtgtctgtccccaatgtggacgtcacgtaaagcaacactgatgt 407
Query: 61 ctgtggggtggaaatggcactggcccttgcatgtttgacagggagcgggtcagtatggtg 120
|||||||||||||||||||||||||||||| ||||||||| || ||||||||||||
Sbjct: 406 ctgtggggtggaaatggcactggcccttgcgtgtttgaca--ga----gtcagtatggtg 353
Query: 121 atgagtgggagtatggaccacagatgtggaagtctgagcagaacacatcttgaacatgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atgagtgggagtatggaccacagatgtggaagtctgagcagaacacatcttgaacatgtc 293
Query: 181 cctgaactaacttaatctttctccccctaagcccattccttccttctatctgaatatggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cctgaactaacttaatctttctccccctaagcccattccttccttctatctgaatatggc 233
Query: 241 tcttagcttaagatgaaacagttgtgtggagagt-gggggcactctgggggtgtcacaat 299
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 232 tcttagcttaagatgaaacagttgtgtggagagtggggggcgctctgggggtgtcacaat 173
Query: 300 gactaggcaatagtattggcatttcgtggagcaaggccaaggatgtcaactattttgaac 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 172 gactaggcaatagtattggcatttcgtggagcaaggccaaggatgccaactattttgaac 113
Query: 360 tgtatgagagaatcccacacatttttctgtatgaaatgtcattagcacctcttttgagaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tgtatgagagaatcccacacatttttctgtatgaaatgtcattagcacctcttttgagaa 53
Query: 420 acgtgaagaatgtcatccttggatacccaactgcccaagttagaaacctggg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 acgtgaagaatgtcatccttggatacccaactgcccaagttagaaacctggg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1008
Length adjustment: 10
Effective length of query: 604
Effective length of database: 998
Effective search space: 602792
Effective search space used: 602792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
