Query= MSMg01no154_c21.b1 MSMg01no154_c21.b1 CHROMAT_FILE:
MSMg01no154_c21.b1 PHD_FILE: MSMg01no154_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:44 2005
(547 letters)
>mm_chr5_33748088_33749034
Length = 947
Score = 1042 bits (539), Expect = 0.0
Identities = 545/547 (99%)
Strand = Plus / Minus
Query: 1 tatatttttcattgatttgttgttttaaaccattaagaagatgggtaagcgtgttagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tatatttttcattgatttgttgttttaaaccattaagaagatgggtaagcgtgttagagc 688
Query: 61 aaggcaaacactcagggcctgaacacaccactgttttcacactgtcgtagaaaatcaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaggcaaacactcagggcctgaacacaccactgttttcacactgtcgtagaaaatcaatc 628
Query: 121 tcactgacatattttcaaagttaaaacccaaaaagcagagcacattcctcaggccggagg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 627 tcactgacatattttcaaagttaaaacccaaaaagcagagcacattcctcaggctggagg 568
Query: 181 gtgcgtgaccctgaaagaatgagacattaccctgctgaccaccatgcccctgctgccttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtgcgtgaccctgaaagaatgagacattaccctgctgaccaccatgcccctgctgccttg 508
Query: 241 cagggcctgactccagtagtcccttggccaaaatgtactcccaaagttgcttttagaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cagggcctgactccagtagtcccttggccaaaatgtactcccaaagttgcttttagaaag 448
Query: 301 agtcataaaaatgtccaaagctcctttttttgtttaaattggccaagtggcacctatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agtcataaaaatgtccaaagctcctttttttgtttaaattggccaagtggcacctatttg 388
Query: 361 cctgaagcactaaagcagacagtgcgggcgagatggatcgataggaggaaatggagaggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cctgaagcactaaagcagacagtgcgggcgagatggatcgataggaggaaatggagaggc 328
Query: 421 tggggctccacacaaagttaggctgccgcgcgctgacattattgattttacctagttcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tggggctccacacaaagttaggctgccgcgcgctgacattattgattttacctagttcag 268
Query: 481 ctggccttgtaattaaaatgtaaatttgagaaagagattatgtcctgacagaaatggcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 267 ctggccttgtaattaaaatgtaaatttgagaaagagattatgtcctgacagaaatggtag 208
Query: 541 gattaag 547
|||||||
Sbjct: 207 gattaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_c21.g1 MSMg01no154_c21.g1 CHROMAT_FILE:
MSMg01no154_c21.g1 PHD_FILE: MSMg01no154_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:44 2005
(540 letters)
>mm_chr5_33624069_33625006
Length = 938
Score = 963 bits (498), Expect = 0.0
Identities = 529/540 (97%), Gaps = 2/540 (0%)
Strand = Plus / Plus
Query: 1 tctcaaggcccagcccctctgcctgtggctgcactgaggtttctgtcagacagatcattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcaaggcccagcccctctgcctgtggctgcactgaggtttctgtcagacagatcattt 260
Query: 61 atttcacttcctcttctgttttcccattggcataccactgcccaacacattccaaggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcacttcctcttctgttttcccattggcataccactgcccaacacattccaaggagg 320
Query: 121 gatactaatgtccctgttttaaaatggagatagcgatagctcctggggaagacaggatga 180
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 321 gatactaatgtccctgttttaaaatggagatggcgatagctcctggggaaggcaggatga 380
Query: 181 cagctctgcccactgaaactggccaggtctcccagaaggcacagctttcccaacatgtac 240
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 cagctccacccactgaaactggccaggtctcccagaaggcacagctttcccaatatgtac 440
Query: 241 acacgcctaaactgaagatgactccctctaaaatggttattaacatgtcttctattgaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacgcctaaactgaagatgactccctctaaaatggttattaacatgtcttctattgaac 500
Query: 301 taaagcaagacaatgggggtgggtactgattatctgagacacagctttctgcatcattgg 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagcaagacaatgggggcgggtactgattatctgagacacagctttctgcatcattgg 560
Query: 361 aagtaataacataaaatagctttacatctgccgccaactacgaactacctgccacacaca 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 aagtaataacataaaatagctttacatctgccgccaacgacgaactacctgccacacaca 620
Query: 421 aacctactggatacgtgagaacttctctagggttttggttggggaagaccacttgtcctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacctactggatacgtgagaacttctctagggttttggttggggaagaccacttgtcctt 680
Query: 481 tactggcaatggggtggtaatggggagcactgcatctcaggccaggctggtctgccatac 540
|||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct: 681 tactggcaatggggtggtaatgggcaacactg--tctcaggccaggctggtctgccatac 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 938
Length adjustment: 10
Effective length of query: 530
Effective length of database: 928
Effective search space: 491840
Effective search space used: 491840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
