BAC Information

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BAC

Clone NameMSMg01-154F12
Chromosome5 (Build37)
Map Location 72,360,096 - 72,518,118
singlet/doubletdoublet
Overlap geneGabrb1, LOC666545
Upstream geneGabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneCommd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154F12.T7 (MSMg01no154_f12.b1)MSMg01-154F12.TJ (MSMg01no154_f12.g1)
ACCAG355660AG355661
length712713
length of high quality
(start - end)		449 (63 - 511)534 (72 - 605)
definitionCHROMAT_FILE: MSMg01no154_f12.b1 PHD_FILE: MSMg01no154_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:57 2005CHROMAT_FILE: MSMg01no154_f12.g1 PHD_FILE: MSMg01no154_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,360,096 - 72,360,544)(72,517,585 - 72,518,118)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXAATTCAAAAGAGGATCCGCGGAAT
TCTGCAATTCCAAAATCATTTCAATTAGTCGCATGCAGACAGAGAGGGTC
TGGTGAAGTGTGGGACTGACATGGTCATGCTGGCAGTGTCCAGGATGGAT
ACAACTAAAAACGACAGTGCCCGTGCCCAGGCTCACCTCCTTCCCCATGT
TCTTTTGTGCCTTGTTATCGTTTTCTGTATTTTTCCATCTCCCCAGAGGC
TTTGTCCTGTTAAATATGCCTATGGCACATACTTCATAGATGGGAGCTGA
TGATCAAGGTACATTATTTAACTCTACCCCCTCTGCACAAGAAAATGGGA
CCAGTATTTCTGTTCCTCTTGTAATGGAAGTTCAGTACAAGAGCAGTTTC
CCAAGTCATGCAGACAGAGAGCCCACTGTTTTTGCGACTTTACTACGCTG
TCATTTCACAACACACTACCCATCAGCCTTGTCTCTTCCTTTCCCAGACT
TTTACAACCAGATTCCCAACAAAGGTCCTTTGTAGAGGACCCATCAAAGA
CCAGCCTCAGTTAGTCCATCCAAAATGCTCATCCCTATGTCCACAGTGCA
GTTACTGCCTTTCCATCTTGCCCTTGCCCTTATACCACTGATATCATGTG
AAAAACATATGGAGGTGGTTCATTCTCTGTTATCCCCTCTGGCCCATTTT
ATTGAATTTATA

TGAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTACAGTGCACAGCTTACTGCACATGCA
GAAAATTGACTGGCAGTGTTTGGATGATTTCCCACAAAGAACGGAAATGT
GGGAGGAGAGGCTGCACCACAGAACTTACATCTAATTACAGTGAGAAAAG
TTCTCTATCCTAACCTTTGGAGTTGCAACTTCAATTTGCTATGAATCTTC
CATAGATTCTCACAGTGTTCTTCATGATTTACAATGACTTTCTGTAGTCT
CTGGTCACAGACCACCCCTGCATTTATTCCATCCATTTTATTTATTTGCA
CACAGCAGGCATAGTGGCCAGTATATACAACTAAAAAAAGTTCTGGGTTA
GTATTAAAGTATCCCCGAGGAAGCTTGCTTAAAGTCTTGTTTTGCTGTGA
AATCTGTCTTTCAAAGCTCTAAATACCATCCCCAGCTTCAAATGGTGCCC
AAGGGGTTCATGAATCTACAGTCGTTATCACCTTGGAGATTGAAACTCTC
ATAATGTCTGGATTCAGCAGCTGTACTTATATAAAAAAATGCTTCCGTGC
AGCTGGTGGAAGTATAAATCAATACAGGGCCTGAACTTTCGAGGTGTCCG
TTTGGCTGTTCCTTGAACTAACTGGCCAGCTGAGGCCATCTAAAGTAATG
TGCATTACAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_f12.b1 MSMg01no154_f12.b1 CHROMAT_FILE:
MSMg01no154_f12.b1 PHD_FILE: MSMg01no154_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:57 2005
         (449 letters)



>mm_chr5_72359896_72360744
          Length = 849

 Score =  845 bits (437), Expect = 0.0
 Identities = 446/449 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatcatttcaattagtcgcatgcagacagagagggtctggtgaagtgtgggactgacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 aaatcatttcaattagtcgcatgcagacagagagggtctggtgaagtgtgggactgagat 260

                                                                       
Query: 61  ggtcatgctggcagtgtccaggatggatacaactaaaaacgacagtgcccgtgcccaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcatgctggcagtgtccaggatggatacaactaaaaacgacagtgcccgtgcccaggc 320

                                                                       
Query: 121 tcacctccttccccatgttcttttgtgccttgttatcgttttctgtatttttccatctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacctccttccccatgttcttttgtgccttgttatcgttttctgtatttttccatctcc 380

                                                                       
Query: 181 ccagaggctttgtcctgttaaatatgcctatggcacatacttcatagatgggagctgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagaggctttgtcctgttaaatatgcctatggcacatacttcatagatgggagctgatg 440

                                                                       
Query: 241 atcaaggtacattatttaactctaccccctctgcacaagaaaatgggaccagtatttctg 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaaggtacaggatttaactctaccccctctgcacaagaaaatgggaccagtatttctg 500

                                                                       
Query: 301 ttcctcttgtaatggaagttcagtacaagagcagtttcccaagtcatgcagacagagagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcctcttgtaatggaagttcagtacaagagcagtttcccaagtcatgcagacagagagc 560

                                                                       
Query: 361 ccactgtttttgcgactttactacgctgtcatttcacaacacactacccatcagccttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccactgtttttgcgactttactacgctgtcatttcacaacacactacccatcagccttgt 620

                                        
Query: 421 ctcttcctttcccagacttttacaaccag 449
           |||||||||||||||||||||||||||||
Sbjct: 621 ctcttcctttcccagacttttacaaccag 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no154_f12.g1 MSMg01no154_f12.g1 CHROMAT_FILE:
MSMg01no154_f12.g1 PHD_FILE: MSMg01no154_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:57 2005
         (534 letters)



>mm_chr5_72517385_72518318
          Length = 934

 Score = 1017 bits (526), Expect = 0.0
 Identities = 532/534 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtacagtgcacagcttactgcacatgcagaaaattgactggcagtgtttggatgatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 agtacagtgcacagcttactgcacatgcagaaaattgactggcagtgtttggatgatttc 675

                                                                       
Query: 61  ccacaaagaacggaaatgtgggaggagaggctgcaccacagaacttacatctaattacag 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ccacaaagaacagaaatgtgggaggagaggctgcaccacagaacttacatctaattacag 615

                                                                       
Query: 121 tgagaaaagttctctatcctaacctttggagttgcaacttcaatttgctatgaatcttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgagaaaagttctctatcctaacctttggagttgcaacttcaatttgctatgaatcttcc 555

                                                                       
Query: 181 atagattctcacagtgttcttcatgatttacaatgactttctgtagtctctggtcacaga 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 554 atagattctcacagtgttcttcatgatttacaatggctttctgtagtctctggtcacaga 495

                                                                       
Query: 241 ccacccctgcatttattccatccattttatttatttgcacacagcaggcatagtggccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ccacccctgcatttattccatccattttatttatttgcacacagcaggcatagtggccag 435

                                                                       
Query: 301 tatatacaactaaaaaaagttctgggttagtattaaagtatccccgaggaagcttgctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tatatacaactaaaaaaagttctgggttagtattaaagtatccccgaggaagcttgctta 375

                                                                       
Query: 361 aagtcttgttttgctgtgaaatctgtctttcaaagctctaaataccatccccagcttcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aagtcttgttttgctgtgaaatctgtctttcaaagctctaaataccatccccagcttcaa 315

                                                                       
Query: 421 atggtgcccaaggggttcatgaatctacagtcgttatcaccttggagattgaaactctca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atggtgcccaaggggttcatgaatctacagtcgttatcaccttggagattgaaactctca 255

                                                                 
Query: 481 taatgtctggattcagcagctgtacttatataaaaaaatgcttccgtgcagctg 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taatgtctggattcagcagctgtacttatataaaaaaatgcttccgtgcagctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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