BAC Information

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BAC

Clone NameMSMg01-154H20
Chromosome5 (Build37)
Map Location 56,447,599 - 56,447,985
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154H20.T7 (MSMg01no154_h20.b1)MSMg01-154H20.TJ (MSMg01no154_h20.g1)
ACCAG355768
length724728
length of high quality
(start - end)
---369 (63 - 431)
definitionCHROMAT_FILE: MSMg01no154_h20.b1 PHD_FILE: MSMg01no154_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:08 2005CHROMAT_FILE: MSMg01no154_h20.g1 PHD_FILE: MSMg01no154_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXX
ATGTGGTAGGCCTGGCGAGCGCCTGTTTCATACGTAGAGGTGAACTATAG
AATGTTTCGCAAAATTCTCACTCATACTGGTAGGCTGCATGCCCAGCCGT
AGATGCTCAACAGAACATGAACTCAAACACTGTCATTTAAAGTTCTTTGT
TTCACAGTGTTAAATCGGGGCTTTTTTTTGTTGTTTGTTTGCTTTTTTTT
TTTTTTTGTTGTTCTTGAATTTTACAAGTCTTTCATGTATATTTTATGAC
CTCTGGTACCAGGCTTGAATGGAATTCCTGTGTGTGCAGATGTGTTTCCA
CATCTGTAGTGTTTCTGGTGCTTTTTCTTTGAATCCTTTTATTTATTTAT
TTTTTGTTCTATTCTGATTTGCTTGACTTTACTTAATTTATTTTATTATT
ATGTCTTACCTGACTGCTTTCTAACAAGACAGAAATAGTTGTTGGATCTG
GATGGCACAAGTTGTGAGGAAATGATATGACTATCGGTTTAAACAAATGT
AACCTGATCATATTTTACACAACTCCTAATATTGATATTCCCTGATTATC
TCCCCCCCCTAATTAAATATGGTAAATCACCATAGATCATTCTTCTCCTG
TAAAAAGTTATCCTGCAAACTCGTTGACTATCTATTGCACTCTTTTTCTT
TGCCCCTATATCTACCCCGTTTTTCATTCATTATTAATACTTTACCATAT
AATTTTTTTTTTTACTCCCTTTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_h20.g1 MSMg01no154_h20.g1 CHROMAT_FILE:
MSMg01no154_h20.g1 PHD_FILE: MSMg01no154_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:08 2005
         (369 letters)



>mm_chr5_56447414_56448185
          Length = 772

 Score =  594 bits (307), Expect = e-174
 Identities = 358/387 (92%), Gaps = 21/387 (5%)
 Strand = Plus / Plus

                                                                       
Query: 4   tctcactcatactggtaggctgcatgcccagccgtagatgctcaacagaacatgaactca 63
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 186 tctcactcatactggtaggctgcatgcccagccgtagatgctcaacagaaaatgaactca 245

                                                                       
Query: 64  aacactgtcatttaaagttctttgtttcacagtgttaaatcggggc--ttttttttgttg 121
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||
Sbjct: 246 aacactgtcatttaaagttctttgtttcacagtgttaaatcggggcttttttttttgatg 305

                                                                       
Query: 122 tttgtttg---cttttttttttttt----------------ttgttgttcttgaatttta 162
           ||||||||   ||||||||||||||                |||||||||||||||||||
Sbjct: 306 tttgtttggttcttttttttttttttttttttttgttgttgttgttgttcttgaatttta 365

                                                                       
Query: 163 caagtctttcatgtatattttatgacctctggtaccaggcttgaatggaattcctgtgtg 222
           ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct: 366 caagtctttcatgtatattttttgacctctggtaccaggtttgaatgaaattcctgtgtg 425

                                                                       
Query: 223 tgcagatgtgtttccacatctgtagtgtttctggtgctttttctttgaatccttttattt 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgcagatgtgtttccacatctgtagtgtttctggtgctttttctttgaatccttttattt 485

                                                                       
Query: 283 atttattttttgttctattctgatttgcttgactttacttaatttattttattattatgt 342
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 486 atttattttttgttctattctgatttgtttgactttacttaatttattttattattatgt 545

                                      
Query: 343 cttacctgactgctttctaacaagaca 369
           ||||  |||||||||||||||||||||
Sbjct: 546 cttaggtgactgctttctaacaagaca 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 772
Length adjustment: 9
Effective length of query: 360
Effective length of database: 763
Effective search space:   274680
Effective search space used:   274680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)