TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAAAGAGGATCCGCGGA
ATTCACCAGTTGGAGAGAGGCAGGAGGCCTGGGATGGCCTCCAGGAGCAG
CTTTATTATAGAAGCAGGTTTCTCTTGGCCTTTGTTATAGTTATTTTCTC
GTTGTTGTGTCAAAATACCCAATGGAAGTTCCCTAGGGAAGGAGGATTGT
TTAGGCTCACAGCTTGATAATGGAGTTAATCATGACAAGCAAGTATGGTG
GCCAGAATTGGTCATTTCAACCAGTTCTCTCTTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTGTCTCTCTCTACACAGACATACAGACACATCTAAGTGGACCTTCC
TACCTATAAATTAACAATAAAACCTTAAAATTTTTATTCTGCCCACATTA
AAAAGATGCCTACGTGTCCCTCAAGACACTAGGAGTCATTCTTCCTCAGG
GTGGGACTTGTAGACTCATCTCCACTCCCCATTTCACAGTAGAAAAAAAA
TTGCACAATGTTTGCATAGCAAGCGAAGAACCTATGCCCAATAGAATTTT
AATAAACAAAGTACCCTTCGAGATAGCGTGGTCCATCTTTTGTGTCCACC
TCGGTACCCTCCGAAAATATATCTGAGCCAACTTACTGCCCCCCTTTTTT
CTGATGCCGGGCCCTCCTTGGAAAGACGGCCTGAGCA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAGACCAAGCCTAAACTACAT
CTGCACATCGCGGCTTGATGACTCCAATGTAGGCACATGGCATGCAGAAC
CCTACTTATCAGTGTCATTTGGGTATGGCTCCATGGGGTACAAAAGGAGG
GACAAGAAGTTGCAACTAGAATAGGTGAGAGGTGGCAAGCATGAATACCA
GTGACATCTTCTCCAGTGGTCCTGTAAGTCCTTGTAAGTGTCACCACCTG
CTCAATATCACAGGCAACAACCATGTCTGGTCCTTCCAAGAGAGCCACAG
CATCACCAAGGTGCTCCAGGAAACCTTCTCTCTCCATAGAAAAGAAGACC
CATTACCCATGGGGCTGGGACAGCTGCGGAGTACAAAGCAGGGAAAGGAA
AAGAGTGGAGCTGAGACCAGTGGTAAGGAGTGTCCTCCTGAGTCAGGAAA
CACACATGCTGAGGTGCCTGCTCTACAGGGCCTTTTGGTTGGGCTTTGCT
TGCCTGTCCCAGAGACTGAGACTTAGAGTCTTTCTCTGGGATGCTGGGAG
GATGAACTCCAGTCTCATCAGCTGCCTTAAGTGGCTACCTTCTTAGCACC
TCAACTCCAGTTCCTCTGCCCCAGGCTGGTGATCTTCCTTCTTCCTGTGG
AATATCAGGCCACTCCAAGTCCTGGTGCCCAGCC

Query= MSMg01no155_b08.g1 MSMg01no155_b08.g1 CHROMAT_FILE:
MSMg01no155_b08.g1 PHD_FILE: MSMg01no155_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:55 2005
         (605 letters)



>mm_chr5_27809008_27810012
          Length = 1005

 Score = 1162 bits (601), Expect = 0.0
 Identities = 604/605 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaagaccaagcctaaactacatctgcacatcgcggcttgatgactccaatgtaggcac 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 805 tctaagaccaagcctaaactacatctgcacatcgaggcttgatgactccaatgtaggcac 746

                                                                       
Query: 61  atggcatgcagaaccctacttatcagtgtcatttgggtatggctccatggggtacaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atggcatgcagaaccctacttatcagtgtcatttgggtatggctccatggggtacaaaag 686

                                                                       
Query: 121 gagggacaagaagttgcaactagaataggtgagaggtggcaagcatgaataccagtgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagggacaagaagttgcaactagaataggtgagaggtggcaagcatgaataccagtgaca 626

                                                                       
Query: 181 tcttctccagtggtcctgtaagtccttgtaagtgtcaccacctgctcaatatcacaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcttctccagtggtcctgtaagtccttgtaagtgtcaccacctgctcaatatcacaggca 566

                                                                       
Query: 241 acaaccatgtctggtccttccaagagagccacagcatcaccaaggtgctccaggaaacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaaccatgtctggtccttccaagagagccacagcatcaccaaggtgctccaggaaacct 506

                                                                       
Query: 301 tctctctccatagaaaagaagacccattacccatggggctgggacagctgcggagtacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctctctccatagaaaagaagacccattacccatggggctgggacagctgcggagtacaa 446

                                                                       
Query: 361 agcagggaaaggaaaagagtggagctgagaccagtggtaaggagtgtcctcctgagtcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcagggaaaggaaaagagtggagctgagaccagtggtaaggagtgtcctcctgagtcag 386

                                                                       
Query: 421 gaaacacacatgctgaggtgcctgctctacagggccttttggttgggctttgcttgcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaacacacatgctgaggtgcctgctctacagggccttttggttgggctttgcttgcctg 326

                                                                       
Query: 481 tcccagagactgagacttagagtctttctctgggatgctgggaggatgaactccagtctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcccagagactgagacttagagtctttctctgggatgctgggaggatgaactccagtctc 266

                                                                       
Query: 541 atcagctgccttaagtggctaccttcttagcacctcaactccagttcctctgccccaggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcagctgccttaagtggctaccttcttagcacctcaactccagttcctctgccccaggc 206

                
Query: 601 tggtg 605
           |||||
Sbjct: 205 tggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)