BAC Information

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BAC

Clone NameMSMg01-155B09
Chromosome5 (Build37)
Map Location 27,809,490 - 27,809,812
singlet/doubletsinglet
Overlap geneDpp6
Upstream gene4930584F24Rik, B930011P16Rik
Downstream geneSpeer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8, Shh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155B09.T7 (MSMg01no155_b09.b1)MSMg01-155B09.TJ (MSMg01no155_b09.g1)
ACCAG356201AG356202
length802717
length of high quality
(start - end)
149 (82 - 230)323 (59 - 381)
definitionCHROMAT_FILE: MSMg01no155_b09.b1 PHD_FILE: MSMg01no155_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:55 2005CHROMAT_FILE: MSMg01no155_b09.g1 PHD_FILE: MSMg01no155_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCATT
GAGGAGGGAGGCAGGAGGCCTGGGATGGNCTCCAGGAGCAGCTTTATTAT
AGAAGCAGGTTTCTCTTGGCCTTTGTTATAGTTATTTTCTCGTTGTTGTG
TCAAAATACCCAATGGAAGTTCCCTAGGGAAGGAGGATTGTTTAGGCTCA
CAGCTTGATAATGGAGTTAATCATGACAAGCAAGTATGGTGGCCAGAATT
GGTCATTTCAACCAGCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCACACTACCCTCTCTCTCCTCTTTGTCT
CTCCTCCCCCCCCACACCCCCTATCACCCCCCCCAACCGCCCTCTTCCCT
TCCCCTCCCCCCCCCTCTTTCTTGCCTTTTCCACTTTTCCTTTTGTTTCC
CCCTCCGCCCCGAACGCTCTCCTCCGCATTTCCCGTCGATCCCCATATAC
CCCCCTCCCCCCCCCTTGTCCCTCCCACCCCCTGCCCCTTCCCCGCCCCC
TATCTTCCTCCCCCTCCTCCTCTTTTTGTCTTTTATTTCCCTGCCCCCCC
TTCTCCCCCTACCCTTCATTTTCCTCTACCCTCCTAGATCACCTCCCACC
TCCCTCGTTTCCCCATTCCTTACATCAGGCGCCCCTTCCCCTCCCCTTCC
CCCCTTTCCTCTCTCCCTCCTTTCATTAAACCTCCCCCTCTCCTCCCCCT
TCTCCCTTTACTACCGCTCCCACCGCCATAACTCTCCCCCCCCCCTTCTT
AC
TGGAGGCCGCCTGTCAGAAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCTAAGACCAAGCCTAAACTACATCTGCACATCGCGGCTTGA
TGACTCCAATGTAGGCACATGGCATGCAGAACCCTACTTATCAGTGTCAT
TTGGGTATGGCTCCATGGGGTACAAAAGGAGGGACAAGAAGTTGCAACTA
GAATAGGTGAGAGGTGGCAAGCATGAATACCAGTGACATCTTCTCCAGTG
GTCCTGTAAGTCCTTGTAAGTGTCACCACCTGCTCAATATCACAGGCAAC
AACCATGTCTGGTCCTTCCAAGAGAGCCACAGCATCACCAAGGTGCTCCA
GGAAACCTTCTCTCTCCATAGAAAAGAAGACCCATTACCCATGGGGCTGG
GACCGCTGCGGAGTACAAAGCAGGGATAGGAAAAGAGTGGAGCTGAGACC
CGTGCTAAGGAGTGTCCCTCCTGAGCCAGGAAACACACATGCTGAGGTGC
CTGCTCTACCGGCCCTTTTGGCTGGGCTTTGCCTGCCTGCCCCCCACACT
GATACTTACAGCCCTTCTCTGCGATGCTGTTAAGAAGTACCCCCGCCCCC
TCAGGTGCCCTAAGGGGCCTCCGCTCTTACATCCCTTATTCTAGTTCCTC
TGACCCTAGGCTTCGCATCTTCCCCCCACCCTGACACAACATTCCTCCCC
CCTCCCGTCCTTGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_b09.g1 MSMg01no155_b09.g1 CHROMAT_FILE:
MSMg01no155_b09.g1 PHD_FILE: MSMg01no155_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:55 2005
         (323 letters)



>mm_chr5_27809290_27810012
          Length = 723

 Score =  617 bits (319), Expect = 0.0
 Identities = 322/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaagaccaagcctaaactacatctgcacatcgcggcttgatgactccaatgtaggcac 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 523 tctaagaccaagcctaaactacatctgcacatcgaggcttgatgactccaatgtaggcac 464

                                                                       
Query: 61  atggcatgcagaaccctacttatcagtgtcatttgggtatggctccatggggtacaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atggcatgcagaaccctacttatcagtgtcatttgggtatggctccatggggtacaaaag 404

                                                                       
Query: 121 gagggacaagaagttgcaactagaataggtgagaggtggcaagcatgaataccagtgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gagggacaagaagttgcaactagaataggtgagaggtggcaagcatgaataccagtgaca 344

                                                                       
Query: 181 tcttctccagtggtcctgtaagtccttgtaagtgtcaccacctgctcaatatcacaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcttctccagtggtcctgtaagtccttgtaagtgtcaccacctgctcaatatcacaggca 284

                                                                       
Query: 241 acaaccatgtctggtccttccaagagagccacagcatcaccaaggtgctccaggaaacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 acaaccatgtctggtccttccaagagagccacagcatcaccaaggtgctccaggaaacct 224

                                  
Query: 301 tctctctccatagaaaagaagac 323
           |||||||||||||||||||||||
Sbjct: 223 tctctctccatagaaaagaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)