Query= MSMg01no155_g01.b1 MSMg01no155_g01.b1 CHROMAT_FILE:
MSMg01no155_g01.b1 PHD_FILE: MSMg01no155_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:16 2005
(608 letters)
>mm_chr5_144398971_144399982
Length = 1012
Score = 1125 bits (582), Expect = 0.0
Identities = 600/608 (98%), Gaps = 4/608 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcaaaacgcagcctatgctgagggtgggatagcgccagctccgctccgttaag 64
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcttcaaaacgcagtctatgctgagggtgggatagcgccagctccactccgttaag 264
Query: 65 gaaagccaggttctctcatttttttttttccttttttctggaatactcctatgtgtgcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaagccaggttctctcatttttttttttccttttttctggaatactcctatgtgtgcat 324
Query: 125 ttaccatcaagccattaagttcagagtcagcagctcaatgaaaaatttaatttgcatctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaccatcaagccattaagttcagagtcagcagctcaatgaaaaatttaatttgcatctg 384
Query: 185 tttaagtctttctatagaaagccattggatcttggtgtcttttaagaaccaatatactat 244
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 tttaagtctttctatagaaagccattggatcttggtgccttttaagaaccaatatactat 444
Query: 245 caccctgtaactgaagggaaatagttttgtgattagtggactgattgtaaggttagt--- 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caccctgtaactgaagggaaatagttttgtgattagtggactgattgtaaggttagttag 504
Query: 302 -ggctttcacacagttgtgcatcttggacattttgtttttcttctgtgtgtgtgtgggag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggctttcacacagttgtgcatcttggacattttgtttttcttctgtgtgtgtgtgggag 564
Query: 361 tcacatttctcatatttcttctaattgtagccagtcatcctgtttgggggctatttgaga 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 565 tcacatttctcatatttcttctaattgtagccagacatcctgtttgggggctatttgaga 624
Query: 421 ccagtgctgcctgtgaagaaatcatgcggtctgtggaagccttcttagttagtcttctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagtgctgcctgtgaagaaatcatgcggtctgtggaagccttcttagttagtcttctta 684
Query: 481 gatttgattttataggcaggtttccttgaaaactcccatgcactatttttagatctatgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatttgattttataggcaggtttccttgaaaactcccatgcactatttttagatctatgt 744
Query: 541 ttctgtggttcagggcattagcaatacatacatattagcacagaaatgttcactatctaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttctgtggttcagggcattagcaatacatacatattagcacagaaatgttcactatctaa 804
Query: 601 aggctatt 608
||||||||
Sbjct: 805 aggctatt 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1012
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1002
Effective search space: 599196
Effective search space used: 599196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_g01.g1 MSMg01no155_g01.g1 CHROMAT_FILE:
MSMg01no155_g01.g1 PHD_FILE: MSMg01no155_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:16 2005
(376 letters)
>mm_chr5_144525054_144525829
Length = 776
Score = 716 bits (370), Expect = 0.0
Identities = 373/374 (99%)
Strand = Plus / Minus
Query: 1 ccaatagtctccgagtttctttcatctatttcttgaggtgagttaagacttttggcttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccaatagtctccgagtttctttcatctatttcttgaggtgagttaagacttttggcttat 438
Query: 61 catctgtgtgtcctcatgccactttcctagacacctgtacttgctaaggatgggattgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catctgtgtgtcctcatgccactttcctagacacctgtacttgctaaggatgggattgaa 378
Query: 121 ggtgggatggtaatagccctgggaggggaccagaaggaaacttgggagatggttctactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggtgggatggtaatagccctgggaggggaccagaaggaaacttgggagatggttctactg 318
Query: 181 ccacagatcctacccagagaagggggtgccccatggctaggcagggccaagggtgagcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccacagatcctacccagagaagggggtgccccatggctaggcagggccaagggtgagcac 258
Query: 241 caagtctgtctgatgcagtagaacacaggttgatgggaggaggctcagtgtgcagatgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caagtctgtctgatgcagtagaacacaggttgatgggaggaggctcagtgtgcagatgtg 198
Query: 301 cacgtgcaatctcagcactcacgagcctgacgcaggagaatcacaagttcaaggtcagta 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cacgtgcaatctcagcactcaggagcctgacgcaggagaatcacaagttcaaggtcagta 138
Query: 361 ggctacgtggaaag 374
||||||||||||||
Sbjct: 137 ggctacgtggaaag 124
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
