BAC Information

Click to search

BAC

Clone NameMSMg01-155L16
Chromosome5 (Build37)
Map Location 29,221,971 - 29,222,247
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
Downstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155L16.T7 (MSMg01no155_l16.b1)MSMg01-155L16.TJ (MSMg01no155_l16.g1)
ACCAG356660AG356661
length719764
length of high quality
(start - end)
270 (19 - 288)280 (75 - 354)
definitionCHROMAT_FILE: MSMg01no155_l16.b1 PHD_FILE: MSMg01no155_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:42 2005CHROMAT_FILE: MSMg01no155_l16.g1 PHD_FILE: MSMg01no155_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCACTTTCAACACAGGATCCGCGGAATTCTCCTGTATTTCTTTAAGGGA
GTTAATTATGTCCTTCCTATAGTCCTACATCATCATCATGAGAAGTTACT
TTAGATCCATATCTTGCTTTTCTGATGTGATAGTGTATCCAGGAATTGCT
ATGGTGGGAGAGTTTGGTTCTGGTGATGCCAAGTAACCTTGGTTTCTGTT
GCTTGTGTTTTTATTCTTGCCTCCTGTCCACACACCATTTCTTAAATTAA
TGTAACCTGTTTCCTGAGCGCTGAGAATGAAGACAATCACTTATTTATAA
TAGCTTTGGCTGCCACAGGAAATTTGTATCCTTTTATCGTGCCTACCATT
CATTCCTTGGTGCAGCAGAACTGTCAACTTTTAGCTTAGCTACTATGGAG
GTAAAATCCTTTGGTGATGTGAGGGGCATTCTAGCACCGCCTTATTACCA
TGAACTCCAGTGTTCCACAACTGTTCTTATTTTGTGTCTTGTCCCTTAGT
ACAAGCCCTCATTTTCTCCTCTCCTCCAGTTCTTTTTTACTGTCTTCATT
GCTTTTATGTTCCCAAACCTATATTATTTGTGATATATTATTCCTTCACT
TTCCCGCTATCATTCTTTGCATTTTTATCAGTACCCACTCTCGATATTAC
CCCCTTTTATTTTCCCCCCTGCCCCACCATTACCATCCACTACCCACCCG
TTTCTTCTGTTTTCCGTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTGGCTTTCACATGCGTGTCCTCT
GAGTTGATCCATATGGTCATAGCAGCCAGGTCTCCTTGTTTTTTAAAGGC
TGAATGCTGTGCACTTAGGTTTCATGTTGTTCTTGTTGTCATCGTCATTG
TTGTTGTTTTGTTTTGTTTGTTTTTTCCACTCATCCATGGCAGGGATTCA
GTTGTTTCCATGTTTTAAAATGTGATGCTTGTTGTCATAATAAACATGGA
ATGGATAGTTTCCTTGACACAACTGGTCTGTTTCCTTGTGGTGTGTACAG
GAAGTGGTATTCCTGGGACTTCTGCCTGTCATTTCTGCAGAGCCTCCTTG
CTGTTGTTGCCCCCACAGTACCAATGAATTACTTTTGCTCTCACACCCTC
TTGGTGACAGCCATTCTGACCACAATGAGATGACATACATCTCATTGGTA
TACATTGGCTTGGCACGATATGCATTTCCCACATTACTGTTGTTTGAAAC
CTTTCCCTTACACCCGTTTCCCCTGTCAATGTTCCGCTTTAAATCCACAT
ATATTCAACCCTCTTTGCTAACCCCCTCTCACCTAGTCTATTTTGTCTCG
ATTCCACTTTTGCTCCTTCTCCCACCTTTTTTCGCCCTCCCCTCTCTTTG
CTTCGTTTTATACCTATCTTTTTACCCTCTCCCTTCCCCTATTTTATTTT
CCCTTATTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_l16.g1 MSMg01no155_l16.g1 CHROMAT_FILE:
MSMg01no155_l16.g1 PHD_FILE: MSMg01no155_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:42 2005
         (280 letters)



>mm_chr5_29221768_29222447
          Length = 680

 Score =  511 bits (264), Expect = e-149
 Identities = 275/280 (98%), Gaps = 3/280 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttggctttcacatgcgtgtcctctgagttgatccatatggtcatagcagccaggtctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tcttggctttcacatgcgtgtcctctgagttgatccatatggtcatagcagccaggtctc 263

                                                                       
Query: 61  cttgttttttaaaggctgaatgctgtgcacttaggtttcatgttgttcttgttgtcatcg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 264 cttgttttttaaaggctgaatgctgtgcacttaggtttcatgttgttcttgttgtcgtcg 323

                                                                       
Query: 121 tcattgttgttgttttgttttgtttgttttttccactcatccatggcagggattcagttg 180
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcattgttgtt---ttgttttgtttgttttttccactcatccatggcagggattcagttg 380

                                                                       
Query: 181 tttccatgttttaaaatgtgatgcttgttgtcataataaacatggaatggatagtttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tttccatgttttaaaatgtgatgcttgttgtcataataaacatggaatggacagtttcct 440

                                                   
Query: 241 tgacacaactggtctgtttccttgtggtgtgtacaggaag 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacacaactggtctgtttccttgtggtgtgtacaggaag 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)