Query= MSMg01no155_n22.b1 MSMg01no155_n22.b1 CHROMAT_FILE:
MSMg01no155_n22.b1 PHD_FILE: MSMg01no155_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:52 2005
(491 letters)
>mm_chr5_20432527_20433417
Length = 891
Score = 890 bits (460), Expect = 0.0
Identities = 484/492 (98%), Gaps = 2/492 (0%)
Strand = Plus / Minus
Query: 1 aaaaacataaattattttaaaaacaagttgtataatttggtgtgttcattattcgttttt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 691 aaaaacataaattattttaaaaacaagttgtataatttggtgtgctcattattcgttttt 632
Query: 61 aaccatatttatataattggaaataagaggctaaagcaattttgtcatggtaggatggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaccatatttatataattggaaataagaggctaaagcaattttgtcatggtaggatggtg 572
Query: 121 acatccctccttacagacactggagcataacccttcatcagagaaggactgagagggagc 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 571 acatccctccttacagacactggagcataaccgttcatcagagaaggactgagagggagc 512
Query: 181 acttactccgcccccgccaagcgccaaaccaggagggatgctcttttattctctcttcct 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agttactccgcccccgccaagcgccaaaccaggagggatgctcttttattctctcttcct 452
Query: 241 tgtttacgagtatcctctctagctt-aaaaaaaatacaaaaaacatcctctttgtttctt 299
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 451 tgtttacgagtatcctctctagctttaaaaaaaatacaaaaa-catcctctttgtttctt 393
Query: 300 gtttccatgttaaactgtattctgttactgtttatacatggggaagagtaggaagaattt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtttccatgttaaactgtattctgttactgtttatacatggggaagagtaggaagaattt 333
Query: 360 tgttgtagaatgttgggcagtaacatcataaatcatataaaaacagtttctgttacaata 419
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 332 tgttgtagaatgttgggcagtaacatcataaatcatataaaaacaatttatgttacaata 273
Query: 420 gaaataaaaacaatctcagatttacttaggaatgtctgaatcagtgatgttctcattcgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 272 gaaataaaaacaatctcagatttacttaggaatgtctgaatcagtgatgttctcattagg 213
Query: 480 cagctgggaagc 491
||||||||||||
Sbjct: 212 cagctgggaagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no155_n22.g1 MSMg01no155_n22.g1 CHROMAT_FILE:
MSMg01no155_n22.g1 PHD_FILE: MSMg01no155_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:52 2005
(629 letters)
>mm_chr5_20280419_20281447
Length = 1029
Score = 1193 bits (617), Expect = 0.0
Identities = 626/629 (99%)
Strand = Plus / Plus
Query: 1 atcatgcaaataaatgcctccctaatatcatttaataaatataaataagaagaaattaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatgcaaataaatgcctccctaatatcatttaataaatataaataagaagaaattaag 260
Query: 61 taggaggtgaaaagataaggggaatataataaagtaaaagatactgagtatgggaaaaat 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 taggaggtgaaaagataaggggaatataataaagtaaaagatactaagtatgggaaaaat 320
Query: 121 aaagttttaaatatgctagattggtaaagctgaattatcatagagctgacttttaaactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagttttaaatatgctagattggtaaagctgaattatcatagagctgacttttaaactc 380
Query: 181 acacactaaatcaatcaatcagactaaattatcttacagctcacagttattaagactaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacactaaatcaatcaatcagactaaattatcttacagctcacagttattaagactaca 440
Query: 241 atgttcctctagtttcaagtcctcaagctctttggctgactggttttaactgtccacaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgttcctctagtttcaagtcctcaagctctttggctgactggttttaactgtccacaga 500
Query: 301 gaggacgtaatatggaatcttccaatctctagatgcagttattttaatccctgtcctata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggacgtaatatggaatcttccaatctctagatgcagttattttaatccctgtcctata 560
Query: 361 caaagtcctgttaaaatgacaaaagtcctattaaaataaaggaccagagaaattttaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaagtcctgttaaaatgacaaaagtcctattaaaataaaggaccagagaaattttaaac 620
Query: 421 tccaaatcagatcatgtctagtgatccagagaaataaggaaaaaaatgttaattaaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccaaatcagatcatgtctagtgatccagagaaataaggaaaaaaatgttaattaaagaa 680
Query: 481 aaaaattcaatggaaactgaaacaaataccaaatccataggtttgtaccaagcgtcaacc 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaattcaatggaaactgaaacaagtaccaaatccataggtttgtaccaagcgtcaacc 740
Query: 541 atgcagtgtgaccactgtatgcactggacttcatgtctaagcaaggacgcacaatacaga 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgcagtgtgaccactgtatgcactggacttcatgtctaagcaaggacgcacaatacagg 800
Query: 601 tttcctgcttgacttttagatgctaataa 629
|||||||||||||||||||||||||||||
Sbjct: 801 tttcctgcttgacttttagatgctaataa 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
