BAC Information

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BAC

Clone NameMSMg01-155O08
Chromosome5 (Build37)
Map Location 58,185,151 - 58,185,466
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155O08.T7 (MSMg01no155_o08.b1)MSMg01-155O08.TJ (MSMg01no155_o08.g1)
ACCAG356781AG356782
length763750
length of high quality
(start - end)
373 (42 - 414)317 (72 - 388)
definitionCHROMAT_FILE: MSMg01no155_o08.b1 PHD_FILE: MSMg01no155_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:54 2005CHROMAT_FILE: MSMg01no155_o08.g1 PHD_FILE: MSMg01no155_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTAAAAGTTCCCGGCTAATAGAACATAGGGATATAAAAACAGGTTGGA
TGACTCTGAGGGGTCTTAGCTACCGGGGACCCTGCACACCCCCCACACCC
CCTGTGAACCACACAGAGCTGGAGATCGATGAAAAAGCAAGAGGAATTTA
TTGTTCCAACACTCTGCAGCTATCCTGCACCCAAAGGAGAAGTGAGCCCA
GGCAGCCCGTTCAACCATTTTTTATACAGTTTTCAGGGGCAGAATAGCAC
AGCAGCAAAAAGGCACACTATGAATGGCAGAACAGCATAACTTTTAAACT
GATTGGCCCTTAGGAAATGAGGCAGGTGGCCAGGCGTCGGTAATCAGCCT
TTCCCTTGTGTGTGCGTGTGTGGGGGCCGTAAGTTCCTTTTTCATCCCTT
CCCCCCCCCTCCCCTTCTTTTTCTATCCCAACATTCCCCCTTACCCCTTA
CCCCTTCCCTTTCCCCCCTATCCCTATTCATTCCCCCTTCCCTTTCCCCT
ACCCCTTTTTTTTTTTTCTCTTCACCCTTTCTCTTTTTTTTCCCCCTTTC
CTTTCCCCTCCTTCCCCTTTCCCCCTTTTCCTATCCCCCTTTTTTCCCCC
TTTTCCCCCTCCTTTCCCCCCCCCCTCCCTCTTTTTCTTTTTACCCCTTC
CTATACCCCACCTTCTTTTTCTCCCCATTCTCCCCCCCCCCCCCCCCCTT
TTTTCCCCCCCTA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCAGGCCTTGGTTTGTGGTCATTTACAA
TTTATAATGTGGCTCATTTGACTACTGCACACATAGTTCCAGCATTTTTC
TTATCATGGAAGTATTTCGCATTGAACGAGTCTTTTTAAAAATGTCAGTT
CTGGATTCAAAATAAAATGGTGTGTGTTTGTTCTATTTGAAAAGGAATTA
TTTTTAATTCTGATGACATCTGACATATCCATCAACAATTACGTTAATTT
TTTTTTGTTCATTGCCTTCTTGAGAGTAGTACCCCTTGAGAGTACATTGG
CTTAGGTCACAACATGAAACATCATGCTAATTAAGCTGCTACTTAAATGG
TAGAAAAAATATATCTGCACCAAATATGCTGCTGTAGTGCTGCGTTTCAA
CTTTCGCGTCATTTCAACTAGGCACCCACTAATTTGGAATCCTCTAATCA
TGCGCTCTAATCCTAATGCCAACCTCATACGCCAACATCCTATGATTACA
GACCCTGTCATGCAGACATAGACTGTATTTCATCCTTATCTAAATTTTGA
CCTGATGCATGACTATAATTACCCTGTGTCGCTAATCTCCCCCGTTCATT
ATCCACATGTTTTCCCATCTTTTTTCCCCCCCCCCCTGTATCCCCTCCTC
ATACACCAATTCCCCATTTGCCCCTTACTTTATACCTTTTTTACCCCCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_o08.g1 MSMg01no155_o08.g1 CHROMAT_FILE:
MSMg01no155_o08.g1 PHD_FILE: MSMg01no155_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:54 2005
         (317 letters)



>mm_chr5_58184951_58185666
          Length = 716

 Score =  567 bits (293), Expect = e-166
 Identities = 311/317 (98%), Gaps = 1/317 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaggccttggtttgtggtcatttacaatttataatgtggctcatttgactactgcaca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 516 ttcaggccttggtttgtggtcatttacaatttataatgtggcttatttgactactgcaca 457

                                                                       
Query: 61  catagttccagcatttttcttatcatggaagtatttcgcattgaacgagtctttttaaaa 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 456 catagttccagcatttttcttatcatggaagtatttcccattgaacgagtctttttaaaa 397

                                                                       
Query: 121 atgtcagttctggattcaaaataaaatggtgtgtgtttgttctatttgaaaaggaattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atgtcagttctggattcaaaataaaatggtgtgtgtttgttctatttgaaaaggaattat 337

                                                                       
Query: 181 ttttaattctgatgacatctgacatatccatcaacaattacgttaatttttttttgttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 336 ttttaattctgatgacatctgacatatccatcaacaattacgttaatttatttt-gttca 278

                                                                       
Query: 241 ttgccttcttgagagtagtaccccttgagagtacattggcttaggtcacaacatgaaaca 300
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttgtcttcttgagagaagtaccccttgagagtacattggcttaggtcacaacatgaaaca 218

                            
Query: 301 tcatgctaattaagctg 317
           |||||||||||||||||
Sbjct: 217 tcatgctaattaagctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space:   217756
Effective search space used:   217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)