BAC Information

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BAC

Clone NameMSMg01-155O16
Chromosome5 (Build37)
Map Location 131,141,111 - 131,141,298
singlet/doubletsinglet
Overlap geneCaln1
Upstream geneZfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneWbscr17, Auts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155O16.T7 (MSMg01no155_o16.b1)MSMg01-155O16.TJ (MSMg01no155_o16.g1)
ACCAG356797AG356798
length795794
length of high quality
(start - end)
284 (46 - 329)199 (77 - 275)
definitionCHROMAT_FILE: MSMg01no155_o16.b1 PHD_FILE: MSMg01no155_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:55 2005CHROMAT_FILE: MSMg01no155_o16.g1 PHD_FILE: MSMg01no155_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCG
GAATTCATGGATGTTCCGCCATATTACATTCAGAGGCCATTGTTTCTAAG
CAGACTTCTTCATCCACTTTATTTTAGAGACAGGGTGTCTCTCTGAAATA
GAAGTCACCAATTTTGTTAGATTGTTGGTCAATGACCCAAGGGATCTGCC
CAACGAACCATGTTCTCAGCCATTAACTCCTGAATATATTTTAAACTGTT
TCCGTTTCATGATGTTTTCCCAGAGGTGATTCATCCTCTCTCTCTCTCTC
TCGGNTTTTTTTTTTTTTTTTTTTTGGNTTTTGGNTTTTGNNNNNTTTTT
TTTTTTTTCTCTTTTCCCCCCCCCCTTTCCCCTTTTTCCCTCCCTTTTAT
ACCCTTTCTTATTTTTTCCCCCCCCCCTTTTTTCCCTTTTTCTTACCATC
CCTCCCCCCTTTCCTTTTTTTTTCTTTTCCCTTCCTTCTCCCCTTTCCCC
TTTTCCCCTTTTCCCTTTTCCCCCTTATCCCCTTTTCCTTTTTCCTCTTC
CTTTATCCCTTTCCCACCTTTTTTACCTTTCTCTTCCCCCTTCCACCCTT
TCCTTTTTATTCCCCCCCTTCGCTTTCCCCCCCCTTCCCCCTTTCTCCCT
TTTTTCCTTTTCCCCCTTTTTTTCCCCTTTTTTCCCCTCCCTTTTCCCCA
CCCCCCCTTCCTTTATTTCCTTTCCCCTTATCCTTTTATCCCCCTTTTTT
TTTCCCCCATTCCTCTCTCCCCCTCCCCTCTTTTTACCCCCCCTN
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATTGGCCTCTCAGATTAGCAAG
GACTTCTAAATAGAAAACTCTCCAATGTGATGCTGGCAGAGACATAAAAA
GGATGCCTTCCGATGTGTTCCTGGGGTATTTGTTCCTGGGTATAAATAGG
AAGTTATCTATCAAGGTAGGAAGAAAGAAATAGAAAAGGGAGGAGGAAGA
ATGGGAAGGTGAAGAAGAGAAGCAAGCCCTCCTTTCCCCCCTTTTTCCTC
TTCTCCCTTTTTTCCCCTCCGATCAACCTTTTTTTTTAAAAAAATATACC
TCCTTTTTCCCCTTTTTTCCTTTTTTTTTTTTCCCCCTTCTTTTCCCTTC
CCCCCTTTATTTAATTTTTTTTACTACCCTTTCCCCCTCCCCCCTTATCT
CCCCCCTTTTTCCCCCCTTTTTCCCTCCCCCCCCCCCCCCTTATTTTCTC
TCCTTTCCCCCTTTTTTATTACCCCCTTTTTCCCTTTCTTTTTTCCCCTC
CCTTTTTTCCCTTTTTCTTTTTTCCCTTTTTTTATCCCTTTTTTTCCCCC
TCCTTTTTTCTTTTCCCCCCTTCCCCTTTTTTTTTTTTTTTCCTTTTTTC
CTTTTTTTTTTTTTTCCCCCCTTTCCCTTTTTTTTCCCCCTTCCTTTTTC
CCCCTTTTTTTCCCCTTCTTTTTTCCCCCCCCCGTTATTTCCCCTTCCTT
ACCCCCACACCCTTTTTTCCCTTTCCTTTTCCTTTTTTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_o16.g1 MSMg01no155_o16.g1 CHROMAT_FILE:
MSMg01no155_o16.g1 PHD_FILE: MSMg01no155_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:55 2005
         (199 letters)



>mm_chr5_131140816_131141414
          Length = 599

 Score =  315 bits (163), Expect = 9e-91
 Identities = 185/197 (93%), Gaps = 10/197 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattggcctctcagattagcaaggacttctaaatagaaaactctccaatgtgatgctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 483 acattggcctctcagattagcaaggacttctaaatagaaaactctccaatgtgatactgg 424

                                                                       
Query: 61  cagagaca-taaaaaggatgccttccgatgtgttcctggggtatttgttcctgggtataa 119
           |||||||| | |||||||||||||||||        ||||||||||||||||||||||||
Sbjct: 423 cagagacact-aaaaggatgccttccga--------tggggtatttgttcctgggtataa 373

                                                                       
Query: 120 ataggaagttatctatcaaggtaggaagaaagaaatagaaaagggaggaggaagaatggg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ataggaagttatctatcaaggtaggaagaaagaaatagaaaagggaggaggaagaatggg 313

                            
Query: 180 aaggtgaagaagagaag 196
           ||| |||||||||||||
Sbjct: 312 aagctgaagaagagaag 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)