Query= MSMg01no156_o03.b1 MSMg01no156_o03.b1 CHROMAT_FILE:
MSMg01no156_o03.b1 PHD_FILE: MSMg01no156_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:07 2005
(323 letters)
>mm_chr5_104130920_104131642
Length = 723
Score = 509 bits (263), Expect = e-148
Identities = 297/319 (93%), Gaps = 18/319 (5%)
Strand = Plus / Minus
Query: 5 gaattcttctattcttggggaatcacttttgtactctcgttaattaagtcccttgtgtgg 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 372 gaattcttctattcttggggaatcacttttgtactctccttaattaagtcccttgtgtgg 313
Query: 65 caggaggcgacccacacccttccagcctggtgctagaatgagtagcctggtgctactcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caggaggcgacccacacccttccagcctggtgctagaatgagtagcctggtgctactcat 253
Query: 125 cagtgcaagcagcagttgaaactgaatccaatttggaagaagattctcagctgggtgtag 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cggtgcaagcagcagttgaaactgaatccaatttggaagaagattctcagctgggtgtag 193
Query: 185 tgatgctcatttataatctggcactctagatcctgagttcaaggccagtctacacagcaa 244
|||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 192 tgatgctc-----------------c-agatcctgagttcaaggccagtctacacagcaa 151
Query: 245 gaccctatctctagacagaggtgaatatatacacctatattttgaaatattttatgtatt 304
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gaccctatctctagagagaggtgaatatatacacctatattttgaaatattttatgtatt 91
Query: 305 agtttcttttcttttgctg 323
||||||||||||| |||||
Sbjct: 90 agtttcttttcttctgctg 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no156_o03.g1 MSMg01no156_o03.g1 CHROMAT_FILE:
MSMg01no156_o03.g1 PHD_FILE: MSMg01no156_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:07 2005
(334 letters)
>mm_chr5_104024903_104025636
Length = 734
Score = 630 bits (326), Expect = 0.0
Identities = 332/334 (99%), Gaps = 1/334 (0%)
Strand = Plus / Plus
Query: 1 agaacagtgacaccagtaagaaaataactccagccaggcccagtgccccacccctaggtg 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 202 agaacagtgacacca-taagaaaataactccagccaggcccagtgccccacccctcggtg 260
Query: 61 tctgaagccagcttggtctgtatagtgagttccaggccaatcagagctgcctggtgagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgaagccagcttggtctgtatagtgagttccaggccaatcagagctgcctggtgagac 320
Query: 121 cctgtccaaaattaaaaacaatagtgtaactcctttgttcagtcgtttgcccacagacga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtccaaaattaaaaacaatagtgtaactcctttgttcagtcgtttgcccacagacga 380
Query: 181 gccctctggattccagtgaatagtccctagcacaggatcacatacagggccctgcttaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccctctggattccagtgaatagtccctagcacaggatcacatacagggccctgcttaaa 440
Query: 241 gtctgtgtgaatcacaaaacaagaaagataggagtgagggagagggacttatagggagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctgtgtgaatcacaaaacaagaaagataggagtgagggagagggacttatagggagga 500
Query: 301 agaggtagccagggtgtggggagtaagagtgatg 334
||||||||||||||||||||||||||||||||||
Sbjct: 501 agaggtagccagggtgtggggagtaagagtgatg 534
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
