BAC Information

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BAC

Clone NameMSMg01-157A08
Chromosome5 (Build37)
Map Location 152,515,256 - 152,515,574
singlet/doubletsinglet
Overlap genenone
Upstream geneAprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157A08.T7 (MSMg01no157_a08.b1)MSMg01-157A08.TJ (MSMg01no157_a08.g1)
ACCAG357611AG357612
length725723
length of high quality
(start - end)
323 (38 - 360)294 (66 - 359)
definitionCHROMAT_FILE: MSMg01no157_a08.b1 PHD_FILE: MSMg01no157_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:17 2005CHROMAT_FILE: MSMg01no157_a08.g1 PHD_FILE: MSMg01no157_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTT
AACTTCCCCAGGCTTTAGTTTTTCCTTATTTGTAAAGTTAAATCATCTCA
GTAACTGCCAGTACAAGCTAAAGACTTAAAGCAGTGAATACGTGTTAGCT
CCCTCACCCAGTGTGTTTAAGATGCCCAGTTAATGCCAGCTAGCAGAACA
TGGCCATATCAATGGTAGGTAGAAGGAGCACATTATATTACATAGTGTTG
CCTTTCTGCAAAAGGATGACCCTGTGTGCACTTGTCTGGTGTATATTAAC
CTCCCCCATGCCCACCACATATACACAGGAAAGAGAGAGTTTGTCAACTT
GACACACTTGTTAGCTGGCACTCTGTGTGGGCACTTGCTTGGTCGTTGAT
TAATGTAGGGTGCTCCAGCTCACTATGGGTGGTGTCACACCTGGGTGGAT
GGTTCTGGGATGTTTAGGCCAGGGAACTGAATGTGAGCCTGGAAGCAAGC
CAGTAAATAGTGTTTCTCTGGTCTCTCCTTCAGTTTCTGCGCACAGGCTC
CTGTTTTGACTCCTCTCTTCTATGGACTGAGTGTGGATTAAAAATCTCAC
CTTATGTTCCACAGCCAACAAACAGTAAAACTGAAAATAGCCCTGGGAAG
TCTGCCTTCATATGGACTTTGTTGGAAGCTCCATGTTTCCACCCTATTGA
AAATAGAGCTAGAGAGCGTCCACCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGCTAAAACAATCCGTCTCTGGAATATTTTCCT
TTGAGAGATGTTTAGTGACTCCTTCTATTCTTCAGTGTTTAAGAGGTTAT
TAGCTTGTTTATCCAACCTTGATTTAACTTTGATAAGTTTTTTCTTACAC
AAAAACTGTCCATTTCACTTATATTTTTCAATTTTGTGGAGTACATGTTT
TTGAAGTAAGATCTATTGGCTCTTTACGTTTCCTTGGTGTCTCTTGTTAT
ATCCCTTTTTCCATTTCTAATTGTGTCAATTTGGATATTGTGTCTGTTGA
TTTTCTCATAGAACCACCACTTTGTTTCATTGTTTCTTTGTATTCTTCTC
TTTGTTTTCATGTTAAGAATTTTATTATTGACTTTGTTATTTCCTGCTGT
CTACTCCAGTTGGCTGTGTTTGCTTCTTTTTGTCTAGAGCTTTCAGATGT
GCTGTTAAATGCCTAGTACAGGATCTCTCCAACTTCTTTATGAAGGCACT
TACTGCTATGAACTTTCCTCTGAGCAGCTCTTTTGTTGTGTCTCAAAAGT
TTTGGGATGTTGTGCCTTCATTTTCATTGAATTCTAGAAAGTCTTTTATT
TCTTTGTCTCTTCCTTGACCTAGATGTCATTAAGTAGTGATTCAGTTCCA
AAAATTTGTAGGCTTTCTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_a08.b1 MSMg01no157_a08.b1 CHROMAT_FILE:
MSMg01no157_a08.b1 PHD_FILE: MSMg01no157_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:17 2005
         (323 letters)



>mm_chr5_152515052_152515774
          Length = 723

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttaacttccccaggctttagtttttccttatttgtaaagttaaatcatctcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 523 gaattccttaacttccccaggctttagtttttccttatttgtaaagttaaatcatctcaa 464

                                                                       
Query: 65  taactgccagtacaagctaaagacttaaagcagtgaatacgtgttagctccctcacccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 taactgccagtacaagctaaagacttaaagcagtgaatacgtgttagctccctcacccag 404

                                                                       
Query: 125 tgtgtttaagatgcccagttaatgccagctagcagaacatggccatatcaatggtaggta 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 403 tgtgtttaagatgcccagttaatgtcagctagcagaacatggccatatcaatggtaggta 344

                                                                       
Query: 185 gaaggagcacattatattacatagtgttgcctttctgcaaaaggatgaccctgtgtgcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gaaggagcacattatattacatagtgttgcctttctgcaaaaggatgaccctgtgtgcac 284

                                                                       
Query: 245 ttgtctggtgtatattaacctcccccatgcccaccacatatacacaggaaagagagagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttgtctggtgtatattaacctcccccatgcccaccacatatacacaggaaagagagagtt 224

                              
Query: 305 tgtcaacttgacacacttg 323
           |||||||||||||||||||
Sbjct: 223 tgtcaacttgacacacttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)