BAC Information

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BAC

Clone NameMSMg01-157H09
Chromosome5 (Build37)
Map Location 89,955,677 - 89,955,992
singlet/doubletsinglet
Overlap genenone
Upstream geneIgj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc, LOC622870
Downstream geneNpffr2, LOC631105, Adamts3, EG665733, Cox18, Ankrd17, Alb1, Afp, Afm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157H09.T7 (MSMg01no157_h09.b1)MSMg01-157H09.TJ (MSMg01no157_h09.g1)
ACCAG357936AG357937
length718924
length of high quality
(start - end)
316 (375 - 690)---
definitionCHROMAT_FILE: MSMg01no157_h09.b1 PHD_FILE: MSMg01no157_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:48 2005CHROMAT_FILE: MSMg01no157_h09.g1 PHD_FILE: MSMg01no157_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCTATGACTTTCTCAAGCTGTTAGTGCCATAATCTTTCCAAATACTTC
TCCTTGTAGCCTTTTGCCCCCATTGTCCGTACCCCTGCCTTACTCTGCTA
CAATGTTTAGCTTTTTCGTTCGACCTGGGAAACTCTGAATATGAGACATC
CATATTGTAGAGAGAGACTTCTCTTAGCCATTTGCAACTTCCGAAGAAAT
TGTGTTAGTGTCACCGCAGGGCTCTCCTTGTCTCTCCCTATTGGTGGCTA
TGAGAATCCACACTTCCAGAACCTCAGTGAGGTCTTTCAAGCTACGAGGA
CAAAGATTAGCAGTGGAGGTGAGGATTCACTTGTAATCTAAAATGGAATT
CTCGCTGTTATGACAACTTAACAAAAATCAACGAATGATTAATATGTACC
ACGACCATTCTGGCATACTTAAGGGTGGCTATCCGTTTAGTTCTTAAAGA
ACCTACTAAGATTATCACCAGTTGTCTTTTTGCAGCAAAAAGAAACAGAC
ACCTAGAGGATTAAACAAGGCAAGCCTTCCCAGGAGGCAGTAATCAGAGC
AGCTTCCCTTCTCTTGCAGCGCAGAGATTCTGAATTCACAAGCTACCCAG
CCGCCCCTAAGCAGGCTGAGAGTAGCTGCGCTGTGACTAATCAGCAGCTG
ACGGACCAGTGCAGTTCN
AAGAGATGAGGAGAAGGACTGAGAGAGAAGATATGTGTCGTCGGCCTCCT
TAGGTGTATCTAGTTGAAGGGATCGCGGGCGAAGTCATGTCAGTCTATAC
TGCGTGTGGCGGAGGTGGCAACCTGTGGGCCTCTGATGCGGCCGCAATAG
TTACAAAGAGAGGTAGGAGAACTATATTTTAGAGTCACTATCATATTGAG
AGTGAATATACATGCGTGGTATGTTTTCCACGTAAAAAGAAGAAAATCAG
AATAGAGTATAAGAGATAGGAATACGGGGGAGGGACAAGNAGGGAGGATG
GAAAGGAGTGTAAAGAGGAGATAATGTGAAGTGAATGGAGGGGAAAGATA
AAGTAAGAGGGGAGGGAGCGTATTTTTTTGTTGTGTTAGGGGGGAAAGAA
ATAAAAAAGGGAAAAAGATTTTANATGAATTTCCCCCCCCCCCCCCCCTG
AGGGTGTGGAGGGGGATGTGGAAATTAGAGGTTGGTGGTGGCCAAAAAAA
AGGAGTATAAAAAAAATGTGGGGGGGGGGGGGGGGATGTGTTTGTTTGTG
AATAAAATGACGAAAATAATAGTAGTTGGATTCGGTTGGAGTTTGCGAGA
GTTGGGTGGTGGGAGGAATATATGAAGACAAGAAAATAGTGGGAATATAC
AACCATGATGAGATAGAAATGAGTGATTTTGTAGATGAGAGGAGGCATGG
TGGAGAGATAGGATAATAGAGTAGAAGAGAGAATGAGAATGATATGAGGA
GAGTGATAAAAGAGAAATTGTTAATAGTGTGGGATGGGGGTACGTAGCAC
CAACATGAGTATTAACAGGATTATATTTTATTATAATATAGATAAGTGGA
GAGAGAATAGCCAAGAGTAAATAGAAAAGTGTGTCAGCGAGTGATTATGA
TGATTATATAATAGATGAGATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_h09.b1 MSMg01no157_h09.b1 CHROMAT_FILE:
MSMg01no157_h09.b1 PHD_FILE: MSMg01no157_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:48 2005
         (316 letters)



>mm_chr5_89955477_89956192
          Length = 716

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcacttgtaatctaaaatggaattctcgctgttatgacaacttaacaaaaatcaacga 60
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 attcatttgtaatctaaaatggaattctcgctgttatgagaacttaacaaaaatcaacga 260

                                                                       
Query: 61  atgattaatatgtaccacgaccattctggcatacttaagggtggctatccgtttagttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgattaatatgtaccacgaccattctggcatacttaagggtggctatccgtttagttct 320

                                                                       
Query: 121 taaagaacctactaagattatcaccagttgtctttttgcagcaaaaagaaacagacacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagaacctactaagattatcaccagttgtctttttgcagcaaaaagaaacagacacct 380

                                                                       
Query: 181 agaggattaaacaaggcaagccttcccaggaggcagtaatcagagcagcttcccttctct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 agaggattaaacaaggcaagccttcccaggaggcagtaatcagagcagcttcccttcttt 440

                                                                       
Query: 241 tgcagcgcagagattctgaattcacaagctacccagccgcccctaagcaggctgagagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagcgcagagattctgaattcacaagctacccagccgcccctaagcaggctgagagta 500

                           
Query: 301 gctgcgctgtgactaa 316
           ||||||||||||||||
Sbjct: 501 gctgcgctgtgactaa 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)