BAC Information

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BAC

Clone NameMSMg01-158F23
Chromosome5 (Build37)
Map Location 26,813,386 - 26,813,674
singlet/doubletsinglet
Overlap gene4930584F24Rik
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837
Downstream geneDpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158F23.T7 (MSMg01no158_f23.b1)MSMg01-158F23.TJ (MSMg01no158_f23.g1)
ACCAG358601AG358602
length737747
length of high quality
(start - end)
317 (50 - 366)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no158_f23.b1 PHD_FILE: MSMg01no158_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:53 2005CHROMAT_FILE: MSMg01no158_f23.g1 PHD_FILE: MSMg01no158_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAAATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAACTGGACATAGTACTACCGGATGATCCAGCAATACCTCTCCTG
GGCATATATCCAGATTTGNGTTTTTCCCCNAACAAGGCCCCATGCTCCAC
TATGTTCATAGCAGNCTTATTTACCCCCCCCAAAAAAAGAAAAGAACCTA
GATGCCCCTCACCATATGACTGCATACCGAAAATGTGTCACATCTACCCA
ACGTAGCACCACTCACCTATTACCCAGATCGAATTTATGCTATTCCCATC
CAAATGGACGTACCTGCCACGCATCATCCTGAGCGAGTCCCTCCCCCTCC
CAAGAAACTCCCCCCCTACCCCATTTCCTGATACCCGGATATCCACCCCC
AATCCCACCCATATCCCCGACCTAACACAATCCCTTGCCTAATACATGCA
ATCCCCCTAATCCACCCCCCATTGTTCTTGCCTCTCC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTATGGTTAGGTTTAGGCCCAGTCCCACAT
CTCTCCTAGCTTTGGGCCCAGGCCTATTCTGGTTCAGAGTTTGGCCCAGG
AACACATTTGTATTTCCTGTAGATCCACTCTTATTCAATATTAAGTTTTG
GCCCAGGCCCAATACTCCCCTAGTATTGGGCCCAGGCTTCCTCAGGGTTA
AACTTAGGCCAGGGCCTAAATCTCTTCTAGGTCTGTGCCTGTGCTCTTCA
TGGTTAGGTTTTAGCCTAGTGCCATACCTCTCTTAGCTTAGGGACCAGGC
TTTTTCATGTTTAGGACACACCCCCCCCCCACATCTCTTCTTATTTTCTG
CCTAGGCATCCGCACGCATAGGGAAAATCCTAGACCCATATTGTTTCTAG
CATAAATAGCCCAGGCCTATTTATGATTAGGTTTGGGCTCAGGCCCACAT
CTCCTCTTCTTTTGGGCTCAGCCTTCTTTAGGTTTAGGTTCTAGCTAGGC
CCATATCTAGCTCTGGGTCCAGGCTCTTTTAGATTTAGGGACAGGAGGAG
GCTGATATATCTACTAGTTTTGGTCCCAAGCCTATTCAGGTTTAGAGTTT
GTCCTAGGCCCCCATCTTTCCTAGCTTTGTGCCCATGTCATTTCTGGGTC
AGAGTTTGATCCAGGCACATGCCTACTCTTCCTTTGGATCAGTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_f23.g1 MSMg01no158_f23.g1 CHROMAT_FILE:
MSMg01no158_f23.g1 PHD_FILE: MSMg01no158_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:53 2005
         (289 letters)



>mm_chr5_26813186_26813874
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatggttaggtttaggcccagtcccacatctctcctagctttgggcccaggcctattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatggttaggtttaggcccagtcccacatctctcctagctttgggcccaggcctattc 260

                                                                       
Query: 61  tggttcagagtttggcccaggaacacatttgtatttcctgtagatccactcttattcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttcagagtttggcccaggaacacatttgtatttcctgtagatccactcttattcaat 320

                                                                       
Query: 121 attaagttttggcccaggcccaatactcccctagtattgggcccaggcttcctcagggtt 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 attaagttttggcccaggcccaatactgccctagtattgggcccaggcttcctcagggtt 380

                                                                       
Query: 181 aaacttaggccagggcctaaatctcttctaggtctgtgcctgtgctcttcatggttaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 aaacttaggccagggcctaaatctcttctaggtctgtgcctgtgctcttcacggttaggt 440

                                                            
Query: 241 tttagcctagtgccatacctctcttagcttagggaccaggctttttcat 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagcctagtgccatacctctcttagcttagggaccaggctttttcat 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)