Query= MSMg01no158_j04.b1 MSMg01no158_j04.b1 CHROMAT_FILE:
MSMg01no158_j04.b1 PHD_FILE: MSMg01no158_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:06 2005
(660 letters)
>mm_chr5_98624213_98625273
Length = 1061
Score = 1218 bits (630), Expect = 0.0
Identities = 651/658 (98%), Gaps = 1/658 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaatgtttgatcttctgac-cacgggatgattttctttttcttttttatgagaa 62
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 861 ggaattcaatgtttgatcttctgacacacgggatgattttctttttcttttttatgagaa 802
Query: 63 ttctgagtgtttatggaaaactataggaactttgagatgattttatacttatggccgctg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttctgagtgtttatggaaaactataggaactttgagatgattttatacttatggccgctg 742
Query: 123 tcagtgtaccttcccttttattagggtatcctgacacgtctagaggcctagaaaggcaga 182
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcagtgtaccgtcccttttattagggtatcctgacacgtctagaggcctagaaaggcaga 682
Query: 183 attctcccagccatgtttatacaaaggataagttccaggaactcagtgagctcaagagcc 242
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 attttcccagccatgtttatacaaaggataagttccaggaactcagtgagctcaagggcc 622
Query: 243 acagacagcatccagtctggtgggtgcttgtatctgcactgcgttctacttggtattgct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagacagcatccagtctggtgggtgcttgtatctgcactgcgttctacttggtattgct 562
Query: 303 aagaccttctattctgccacctgacacactgccccgagccctatatggcaagagaataca 362
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaccttctactctgccacctgagacactgccccgagccctatatggcaagagaataca 502
Query: 363 gtaatccttagtgcaatagcaggtacgaagtagagacccgctgccttggcaccagcggca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaatccttagtgcaatagcaggtacgaagtagagacccgctgccttggcaccagcggca 442
Query: 423 gaagcacaaagacttagacccatgcccctgtcagaaagtggtagcacatatgaaggttat 482
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gaagcacaaagacttagacccatgcccctgtcagaaagtggtagcacgtatgaaggttat 382
Query: 483 tgctgacagagacagggtcatgggtggctggtgggctagacctaaggacaaactgatagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgacagagacagggtcatgggtggctggtgggctagacctaaggacaaactgatagc 322
Query: 543 tcaagtgattctcaacgtttctgccattagcttttcaaaaaacctgggctcaagagagtt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagtgattctcaacgtttctgccattagcttttcaaaaaacctgggctcaagagagtt 262
Query: 603 cctgggaactttgtgccagatcctgaaagggcacacatacaaaacagctgtgaagcaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgggaactttgtgccagatcctgaaagggcacacatacaaaacagctgtgaagcaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space: 683150
Effective search space used: 683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no158_j04.g1 MSMg01no158_j04.g1 CHROMAT_FILE:
MSMg01no158_j04.g1 PHD_FILE: MSMg01no158_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:07 2005
(639 letters)
>mm_chr5_98558672_98559710
Length = 1039
Score = 1156 bits (598), Expect = 0.0
Identities = 628/638 (98%)
Strand = Plus / Plus
Query: 1 tcttctgtttctcagaaaagtaagaaaatacaagtgccaaagagagaagaaatgctttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttctgtttctcagaaaagtaagaaaatacaagtgccaaagagagaagaaatgctttct 260
Query: 61 ggacatcagaaatctagggagtcgttgacttcccatttgtgcgggtgggaagctctaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacatcagaaatctagggagtcgttgacttcccatttgtgcgggtgggaagctctaaca 320
Query: 121 gcacgtggtcatcaggtggacatctcacaaatacaccacaaaggcagcaggaataactta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacgtggtcatcaggtggacatctcacaaatacaccacaaaggcagcaggaataactta 380
Query: 181 gaccttgactaatgtgttccttccttatgcctaaaatattaaaactgagtgtatgtaact 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gaccttgactaatgtgttccttccttatgcctaaaatattaaaacggagtgtatgtaact 440
Query: 241 gatgaaatgtgctacctgggcaaaatccaagacttcaaataatttatgaatcattgacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgaaatgtgctacctgggcaaaatccaagacttcaaataatttatgaatcattgacca 500
Query: 301 ccaatgtgaattcataacatctgaccctaataaatttgaagcaagttgggcatactggta 360
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 acaatgtgaattcataacatctgaccctaataaatttgaagtaagttgggcatactggta 560
Query: 361 caagcttttaatctcagcactcatgaggcagaagcaggaggatctctgtgagttagaggc 420
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||
Sbjct: 561 caagcttttaatctcagcactcaggaggcagaatcaggaggatctctgtgagttaaaggc 620
Query: 421 cactctggtctacatagcaaggtctaggacagccaggaccacatagagagaccctgccca 480
||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 cactcaggtctacatagcaatgtctaggacagccaggaccacatagtgagaccctgccca 680
Query: 481 ccccagaaaagaaaacaaacaaaaaattatgacataagttttgtaaataagtaatatgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccccagaaaagaaaacaaacaaaaaattatgacataagttttgtaaataagtaatatgat 740
Query: 541 taccactgtgttaaaaatcaaactatggaaagacaaaacaatagcattaagaaggggttg 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 taccactgtgttaaaaatcaaactatggaaagacaaaacaatagcattaagaagaggttg 800
Query: 601 agaggtggctaggtggacaagaacagttgttgctctta 638
||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agaggtggctaggtggacaagaacagttgttgctctta 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
