Query= MSMg01no159_b19.b1 MSMg01no159_b19.b1 CHROMAT_FILE:
MSMg01no159_b19.b1 PHD_FILE: MSMg01no159_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:46 2005
(689 letters)
>mm_chr5_116827416_116828500
Length = 1085
Score = 812 bits (420), Expect = 0.0
Identities = 586/710 (82%), Gaps = 108/710 (15%)
Strand = Plus / Plus
Query: 4 ggaattctctaccacgtcggaggaaataatcatgtctctttctaagacttctttcaagga 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctaccacgttggaggaaataatcatgtctctttctaagacttctttcaagga 263
Query: 64 cagagaacagttttctcgatttgttatagaccacactgagattatatctatattttatgt 123
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagagaacaggtttctggatttgttatagaccacactgagattatatctatattttatgt 323
Query: 124 atttggtgtttatctatgtctatatcatttatgtctttatcatctacatccatctatctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 atttggtgtttatctatgtctatatcatttatgtctttatcatctacatccatct----c 379
Query: 184 tacttaccaatctgtcacctactgtctgtctatctatctatctatccataatccatccat 243
||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||||||
Sbjct: 380 tacttaccaatctgtcacctattgtctgtctgtctatctatctatccatcattcatccat 439
Query: 244 ccatctaaccacttattcatctatccatcaacccatccaccccatccatccctccaccca 303
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 ccatctaaccacttatttatctatccatcaacccatccaccccatccatccttccaccca 499
Query: 304 t------------tcacctaccccatccatccatccacccacccatccatc----catcc 347
| |||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct: 500 tccattcacccattcacctaccccatccatccatccatccatccatccatctatccatcc 559
Query: 348 atccacccacctgtctacccacccacccatccatctatccatccatccacccattcattt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atccacccacctgtctacccacccacccatccatctatccatccatccacccattcattt 619
Query: 408 atctatccatccatccacccacctatcccatccatccatccatccgtccgtccatccatc 467
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atctatccatccatccacccacctatcccatccatccatccatcc--------------- 664
Query: 468 catccacccacccatccatccttctacccattcatctacctatccacccatccacctatc 527
Sbjct: 664 ------------------------------------------------------------ 664
Query: 528 catccatccatccatccatcatctctatatatttattaataatctatcacctgtatatca 587
||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||
Sbjct: 665 -----atccatccatccatcatctctatatatctatcaataatctatcacctatatatca 719
Query: 588 cccatttaaataggaatatttttatatatcttcagactctagaccatcccctgtgccctc 647
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 720 cccatttaaataggaatatttttatgtatcttcagactctagaccatcccctgtgccctc 779
Query: 648 c--------aacaggtggaagatggtaccaagggaaagttcaacggggcc 689
| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 780 cgtccaagaaacaggtggaagatggtaccaagggaaagttcaatggggcc 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1085
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1075
Effective search space: 729925
Effective search space used: 729925
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_b19.g1 MSMg01no159_b19.g1 CHROMAT_FILE:
MSMg01no159_b19.g1 PHD_FILE: MSMg01no159_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:46 2005
(288 letters)
>mm_chr5_116935940_116936627
Length = 688
Score = 543 bits (281), Expect = e-159
Identities = 284/285 (99%)
Strand = Plus / Minus
Query: 1 tgggacttcctggagtctcgggagcctgaagttctgggcttctcaggagaatggaagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgggacttcctggagtctcgggagcctgaagttctgggcttctcaggagaatggaagaca 426
Query: 61 gaagatcccaggcctgttgccagtacaggaacaacggtgggttggttattcacagcctgg 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 425 gaagatcccaggcctgttgccagtacaggaacaagggtgggttggttattcacagcctgg 366
Query: 121 aggcagagcaagcatgtgggggcctgggcaagtccctttccctcgccttgtctgggccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aggcagagcaagcatgtgggggcctgggcaagtccctttccctcgccttgtctgggccct 306
Query: 181 cagcagtgggatggggagggaagttcaccatgcatactgtacagggtcctcagcacccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cagcagtgggatggggagggaagttcaccatgcatactgtacagggtcctcagcacccac 246
Query: 241 tgagaggccaggttagaaatgctgaacacacaggcacagctatgg 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgagaggccaggttagaaatgctgaacacacaggcacagctatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
