BAC Information

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BAC

Clone NameMSMg01-159K04
Chromosome5 (Build37)
Map Location 97,373,126 - 97,477,308
singlet/doubletdoublet
Overlap geneLOC670358, Bmp2k
Upstream geneCxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1, Fras1, Anxa3, EG666266
Downstream genePaqr3, LOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159K04.T7 (MSMg01no159_k04.b1)MSMg01-159K04.TJ (MSMg01no159_k04.g1)
ACCAG359520AG359521
length730731
length of high quality
(start - end)
321 (46 - 366)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no159_k04.b1 PHD_FILE: MSMg01no159_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:24 2005CHROMAT_FILE: MSMg01no159_k04.g1 PHD_FILE: MSMg01no159_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,476,992 - 97,477,308)(97,373,126 - 97,373,417)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAATAGGTTTTCAGCATTACATTATAAGTAAGTAAATGCTGGTTT
TTCAAACTCTATACTTTATTACAGCATTTTAAAAATAACAACTATAAAAT
TTTTGACAAGGAGGTAAACTATTAGGACTTACAACTGTTGATTGGTGTGT
CTGTGGGTTTGTGAGCATGCACTGTGGAGGTCAGGGGTCAACTGGGAGGA
CTCAGTTCTCTCCTTCCACGGTGGCTCCTGCACATGGCTCTGGCAGCACT
GAACCTGCTCAGCAAGCACTTTTACCCACTGGGCCATCTCACTGGCCTGC
TTTAAAGCCCATAGGTGTATTATAACTCCCCCCCGCCGCTTGAATGTTTT
TAGTTTATCTGATATTTTTCACCCCCCGGCACAATCAAATGGATAGCAGA
AACTTAAATGCTCATATTTATGGTCAAATACAAGAAGCATATGGAACACG
GTAGACTAGCAATTAATTAAACTCTAATTGAACCTAAAATTATCAACAGC
ATTATCATGCTTACCACAGCACTACACAAACACATTCCCACACACATATG
GTTGTCACACATAAACACAGAGAAACGCAGGAATCCTTAGGCATGAAATC
ACTTTTCAATGCATGAACTGCTCCGATTCCCACTCAGAACTGGTCAATGA
TAACAGTCTGAGCCGTCAGACGTTTCAAGC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGACAGGGAGAAAAGCTTGATGT
TCCAATAAAATAATGAACAATCTATTTGGGGAAGGAATTCGAGAGTGCTG
CATGAACACATAACCAAATAAATAAAATTTTCAATTAGGGATAAAAAGCC
TCAGTAAAGTGGTTGAAAAAGGCCAGGGCAATCCTCATTAAAGAGACAGT
ATTTGAACTGGAATTAAATGAGATAGTATCTGTGAACATCCTAGACTCCT
GCCTGACATATAATAATATCAGAAATAGAATTACCATTAATCAAAACGTG
TCCAAAGAAGTTAGCACATCCTTGTAGCCCCCGCCCCCGGAAGCTGAAGT
AGGACGATTGTGAGTTTAAGGCCCACCTGTGCTGATTAACCAGAGTGTGT
CTCAGAGCAGCAGTGAAAACTCCACAAGAAATGATGAACATTTGAGGAAA
TGTACTTAACCTGATTTATATTACACAGTGTACAGCTATATAAGGATAGC
ACATTTTATGCCACTGGTATGTAAAAATGTTTAATTTTATGCATCAGTTA
AAAATAAATATGATTTAAATGCAAGAAAATGAAGTAGTGCCTAGAATGGA
AGCAGATACCTATAGACACAACTCTCAAGGGGCTGAAGCAGGAGGATCAG
AGTTAGTCTGCATTATATAATCAGACTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_k04.b1 MSMg01no159_k04.b1 CHROMAT_FILE:
MSMg01no159_k04.b1 PHD_FILE: MSMg01no159_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:24 2005
         (321 letters)



>mm_chr5_97476959_97477679
          Length = 721

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaataggttttcagcattacattataagtaagtaaatgctggtttttcaaactc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gaattcaaataggttttcagcattacattataagtaagtaaatgctggtttttcaaactc 291

                                                                       
Query: 65  tatactttattacagcattttaaaaataacaactataaaatttttgacaaggaggtaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tatactttattacagcattttaaaaataacaactataaaatttttgacaaggaggtaaac 231

                                                                       
Query: 125 tattaggacttacaactgttgattggtgtgtctgtgggtttgtgagcatgcactgtggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tattaggacttacaactgttgattggtgtgtctgtgggtttgtgagcatgcactgtggag 171

                                                                       
Query: 185 gtcaggggtcaactgggaggactcagttctctccttccacggtggctcctgcacatggct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gtcaggggtcaactgggaggactcagttctctccttccacggtggctcctgcacatggct 111

                                                                       
Query: 245 ctggcagcactgaacctgctcagcaagcacttttacccactgggccatctcactggcctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ctggcagcactgaacctgctcagcaagcacttttacccactgggccatctcactggcctg 51

                            
Query: 305 ctttaaagcccataggt 321
           |||||||||||||||||
Sbjct: 50  ctttaaagcccataggt 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no159_k04.g1 MSMg01no159_k04.g1 CHROMAT_FILE:
MSMg01no159_k04.g1 PHD_FILE: MSMg01no159_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:24 2005
         (292 letters)



>mm_chr5_97372926_97373617
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagacagggagaaaagcttgatgttccaataaaataatgaacaatctatttggggaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagacagggagaaaagcttgatgttccaataaaataatgaacaatctatttggggaagga 260

                                                                       
Query: 61  attcgagagtgctgcatgaacacataaccaaataaataaaattttcaattagggataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcgagagtgctgcatgaacacataaccaaataaataaaattttcaattagggataaaa 320

                                                                       
Query: 121 agcctcagtaaagtggttgaaaaaggccagggcaatcctcattaaagagacagtatttga 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcctcaataaagtggttgaaaaaggccagggcaatcctcattaaagagacagtatttga 380

                                                                       
Query: 181 actggaattaaatgagatagtatctgtgaacatcctagactcctgcctgacatataataa 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actggaattaaataagatagtatctgtgaacatcctagactcctgcctgacatataataa 440

                                                               
Query: 241 tatcagaaatagaattaccattaatcaaaacgtgtccaaagaagttagcaca 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcagaaatagaattaccattaatcaaaacgtgtccaaagaagttagcaca 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)