BAC Information

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BAC

Clone NameMSMg01-159M03
Chromosome5 (Build37)
Map Location 150,115,567 - 150,115,858
singlet/doubletsinglet
Overlap genenone
Upstream geneC130038G02Rik, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap
Downstream gene6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, Fry
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159M03.T7 (MSMg01no159_m03.b1)MSMg01-159M03.TJ (MSMg01no159_m03.g1)
ACCAG359611AG359612
length736740
length of high quality
(start - end)
332 (42 - 373)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no159_m03.b1 PHD_FILE: MSMg01no159_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:32 2005CHROMAT_FILE: MSMg01no159_m03.g1 PHD_FILE: MSMg01no159_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTA
CTTACTGGCTTGCTTCCCCTGGCTTGTTTAGCCTGCTTTCTTGTAGAACC
CAGGACCACCAGCTCAGGGATGGCACCACCCACAATGGGCCCTCCCCTCT
TCATCACTAAGTGAGAAACTGCCTTATAGTTGGATCTCATGGAGGCATTT
CCTCAAGAGAGGCTCCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGTTG
ACACAAAACCAGCCAGTACAGAGACCATTTCCAGTTCTGGGATATTAAGA
ATGAACTTGTTTAAATATTTTTATACACCTCCTTTCATGGCTGTACACCT
TCTTTTCCCGAGGGCCCATATCCAGAAATGAAATTTCTAAGTTGTGACAT
AGCATATATTTAACTTTGTAAGGGGCCTTCGGAGCTTTTCCCAGAGTGAT
TCCACTACTTAATATTCCCTTGCAACGTAGGAGTTCTGACCGCTCGGTGT
CATCACCAACTGCGGTCACCCGCCTGTTCCTCATTCCGCTTGTAGTAGTT
CTGAAGTTTATACTGAATAAGAAGCAGTAAGTGTCCTTCTCATAACGTAG
ACATGCAGATGGTAAGTCAAGCCGAGAACCTATTAGCCGAAAGAGATGGC
CCAGTGTCCATCAAACAGCAGACAAGCTGCTCACAN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTGAAGTTCTGCCCGGCACATACTTT
GGAAATTAGGTTAGAACAAGCGGCTGGTTGTGCTTTATTCACGGCCTTTT
CGGGACAGAGTGCCTTTGAGCACTGAGGCTGTGCTCATGTGACGGTGTGG
TTGTTATGTGGAGGCTTGGGAACTGCCCACCCCGAAGTTCGGGTGTCCAG
AGCTGAGACGCTTCTCTGGTTTCGCAGGGAGAAATTCCTGCGGAAGCTGT
TTTCCCAAAAGCCTCGACATTTCAAATGCATTCCTATTTTATCTGGTTAC
TTCTCTGGGAAGCCATATTCCGGGCTACCGACTCGGGAAGAGATGGAGAG
ATATCACCAGGTTGGCTCCCCCTTCTGTTCCTTGCAGAAGGAACAGAGCG
TCTCACAACTGAGCGTCTAAGCAAAGTCTTCTCTGTGGCAAGCAAGTTCC
CAGCATGCCCTGCGGGCCAGTCTTCAGCGCCTGCCTGGCACAGTCCCATG
ATTCTTTTGCATACTTTTGTGCCTTCTTCAACATCCTTGGAACACCCGTG
TTTCACACCTGCAGATCACAGCCAAAAGAGGCATCTCATTTAGACAGCAA
TAGGCACCCTCTTTTCGCCTCAGGGCAAGGTCTCACTAGACTAGTCTGGA
GTTTGCCCTCCTTCTTCGTTCCCCAACCCCAACCCTAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_m03.g1 MSMg01no159_m03.g1 CHROMAT_FILE:
MSMg01no159_m03.g1 PHD_FILE: MSMg01no159_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:32 2005
         (292 letters)



>mm_chr5_150115367_150116058
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgaagttctgcccggcacatactttggaaattaggttagaacaagcggctggttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgaagttctgcccggcacatactttggaaattaggttagaacaagcggctggttgtg 260

                                                                       
Query: 61  ctttattcacggccttttcgggacagagtgcctttgagcactgaggctgtgctcatgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttattcacggccttttcgggacagagtgcctttgagcactgaggctgtgctcatgtga 320

                                                                       
Query: 121 cggtgtggttgttatgtggaggcttgggaactgcccaccccgaagttcgggtgtccagag 180
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cggtgtggttgttacatggaggcttgggaactgcccaccccgaagttcgggtgtccagag 380

                                                                       
Query: 181 ctgagacgcttctctggtttcgcagggagaaattcctgcggaagctgttttcccaaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagacgcttctctggtttcgcagggagaaattcctgcggaagctgttttcccaaaagc 440

                                                               
Query: 241 ctcgacatttcaaatgcattcctattttatctggttacttctctgggaagcc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcgacatttcaaatgcattcctattttatctggttacttctctgggaagcc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)