Query= MSMg01no159_o13.b1 MSMg01no159_o13.b1 CHROMAT_FILE:
MSMg01no159_o13.b1 PHD_FILE: MSMg01no159_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:43 2005
(662 letters)
>mm_chr5_25412334_25413395
Length = 1062
Score = 1226 bits (634), Expect = 0.0
Identities = 652/658 (99%)
Strand = Plus / Minus
Query: 5 gaattcattacttctgaatgcttaaagtcaccccccccccagactagggtaagctccctt 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaattcattagttctgaatgcttaaagtcaccccccccccagactagggtaagctccctt 619
Query: 65 tggtaccacatccaccctttgtgctcccactacatcagcctctgccactgagagtgatcg 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 618 tggtaccacatccaccctttgtgctcccaccacatcagcctctgccactgagagtgatcg 559
Query: 125 tgctggaaacagcaacttgatagttctcctctatcccaacagtccctaccataagacaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgctggaaacagcaacttgatagttctcctctatcccaacagtccctaccataagacaca 499
Query: 185 gttcagaaactcatgggcagaaatgaggaaacaaatactgggaaagtcgtctacccacct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gttcagaaactcatgggcagaaatgaggaaacaaatactgggaaagtcgtctacccacct 439
Query: 245 cctatgaaaagtccaccttgtgttaactgaagttccctaagagccacatctacactgaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cctatgaaaagtccaccttgtgttaactgaagttccctaagagccacatctacactgaac 379
Query: 305 attctgcaaggctgattggtgggctaggacctccatgaccacggagaggttggggtgttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 attctgcaaggctgattggtgggctaggacctccatgaccacggagaggttggggtgttg 319
Query: 365 cacaccacactttctcagccccattaagagctattcactacccacctttgtgtgtgacct 424
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cacaccagactttctcagccccattaagagctattcactacccacctttgtgtgtgacct 259
Query: 425 gatgtccctgtgaagtaaggccttccagaatatacaaacaaatccctggattctgccaag 484
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gatatccctgtgaagtaaggccttccagaatatacaaacaaatccctggattctgccaag 199
Query: 485 aatagcatcagatgacatctacctcctaccgaaaggatgtcctcctgttttgctgaggtg 544
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aatggcatcagatgacatctacctcctaccgaaaggatgtcctcctgttttgctgaggtg 139
Query: 545 cacccctctgatgttgccaccagtgtattttaataacatcttgatttatgagtttgttct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cacccctctgatgttgccaccagtgtattttaataacatcttgatttatgagtttgttct 79
Query: 605 attatctaaaaacttcataaaacagaaaatagaaataaaaaatattcctaaaactgtc 662
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 78 attatctaaaaacttcataaaacagaaaatagaaataaaaaatattcataaaactgtc 21
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_o13.g1 MSMg01no159_o13.g1 CHROMAT_FILE:
MSMg01no159_o13.g1 PHD_FILE: MSMg01no159_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:43 2005
(295 letters)
>mm_chr5_25355009_25355703
Length = 695
Score = 505 bits (261), Expect = e-147
Identities = 284/295 (96%), Gaps = 7/295 (2%)
Strand = Plus / Plus
Query: 1 caggacagccagggctacatagagaaaccctgtcttgaaaacaacagcaaccaaaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 caggacagccagggctacatagagaaaccctgtcttgaaaacaacagcaaccaaaaacaa 267
Query: 61 aacaaagaaacaaccaaacaaaaaaccctaccaccaccaaaaaacaaaaaacaaaaaaca 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 268 aacaaacaaacaaccaaacaaaaaaccctaccaccaccaaaaaacaaaaaaca------a 321
Query: 121 aaaaaccccaaaaactccaccccgctcattgtcccttccaaggggttattttatttatta 180
||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 322 aaaaa-cccaaaaaccccaccccgctcattgtcccttccaagtggttattttatttatta 380
Query: 181 atattcccttcacccccagagtttgttagcagctatttttagttcaggttgacacatatt 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactcccttcacccccagagtttgttagcagctatttttagttcaggttgacacatatt 440
Query: 241 tgatcccagtaagggaaactaagtagatttgctgttgctttgtaaagttgggaat 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatcccagtaagggaaactaagtagatttgctgttgctttgtaaagttgggaat 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
